Analysis of interatomic Contacts of Structural Units in PDB entry:
2JH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JH8 entry

There is 1 chain in PDB entry 2JH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2JH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
90 94Right-handed 310
Helix 5
5
A
98 129Right-handed alpha
Helix 6
6
A
136 143Right-handed alpha
Helix 7
7
A
177 187Right-handed alpha
Helix 8
8
A
201 211Right-handed alpha
Helix 9
9
A
211 217Right-handed alpha
Helix 10
10
A
245 250Right-handed alpha
Helix 11
11
A
279 297Right-handed alpha
Helix 12
12
A
349 353Right-handed 310
Helix 13
13
A
362 374Right-handed alpha
Helix 14
14
A
379 392Right-handed alpha
Helix 15
15
A
415 418Right-handed 310
Helix 16
16
A
420 429Right-handed alpha
Helix 17
17
A
452 461Right-handed alpha
Helix 18
18
A
470 481Right-handed alpha
Helix 19
19
A
492 497Right-handed alpha
Helix 20
20
A
522 534Right-handed alpha
Helix 21
21
A
550 561Right-handed alpha
Helix 22
22
A
567 577Right-handed alpha
Helix 23
23
A
611 625Right-handed alpha
Helix 24
24
A
634 642Right-handed alpha
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There are 6 sheets in PDB entry 2JH8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
48 51parallel
Strand 3
A
7 10parallel
Strand 4
A
67 71parallel
Strand 5
A
87 88parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
82 84anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
406 408parallel
Strand 3
A
433 437parallel
Strand 4
A
499 504anti-parallel
Strand 5
A
465 469anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
393 394first strand
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
219 223parallel
Strand 3
A
192 196parallel
Strand 4
A
260 264parallel
Strand 5
A
302 308parallel
Strand 6
A
335 341anti-parallel
Strand 7
A
322 324anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 320first strand
Strand 2
A
357 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il