Analysis of interatomic Contacts of Structural Units in PDB entry:
2JHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JHH entry

There are 2 chains in PDB entry 2JHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 81ALA 297
F
 SER 81ALA 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2JHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
88 95Right-handed alpha
Helix 2
2
C
120 124Right-handed 310
Helix 3
3
C
142 149Right-handed alpha
Helix 4
4
C
160 170Right-handed alpha
Helix 5
5
C
198 202Right-handed 310
Helix 6
6
C
219 223Right-handed 310
Helix 7
7
C
240 245Right-handed alpha
Helix 8
8
F
88 95Right-handed alpha
Helix 9
9
F
120 124Right-handed 310
Helix 10
10
F
142 149Right-handed alpha
Helix 11
11
F
160 170Right-handed alpha
Helix 12
12
F
198 202Right-handed 310
Helix 13
13
F
240 245Right-handed alpha
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There are 8 sheets in PDB entry 2JHH. Click on sheet of interest to get list of strands forming it: CA, CB, CC, CD, FA, FB, FC, FD,

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 106first strand
Strand 2
C
112 118anti-parallel
Strand 3
C
126 132anti-parallel
Strand 4
C
289 296anti-parallel
Strand 5
C
173 180anti-parallel
Strand 6
C
186 191anti-parallel
Strand 7
C
210 212anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 106first strand
Strand 2
C
112 118anti-parallel
Strand 3
C
126 132anti-parallel
Strand 4
C
157 158anti-parallel
Strand 5
C
150 151anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
205 207anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 265first strand
Strand 2
C
273 274anti-parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 106first strand
Strand 2
F
112 118anti-parallel
Strand 3
F
126 132anti-parallel
Strand 4
F
287 296anti-parallel
Strand 5
F
173 181anti-parallel
Strand 6
F
186 191anti-parallel
Strand 7
F
210 212anti-parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 106first strand
Strand 2
F
112 118anti-parallel
Strand 3
F
126 132anti-parallel
Strand 4
F
157 158anti-parallel
Strand 5
F
150 151anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
194 196first strand
Strand 2
F
205 207anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
264 265first strand
Strand 2
F
273 274anti-parallel
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