Analysis of interatomic Contacts of Structural Units in PDB entry:
2JI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JI4 entry

There is 1 chain in PDB entry 2JI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19ASP 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2JI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 31Right-handed 310
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
81 99Right-handed alpha
Helix 4
4
A
125 137Right-handed alpha
Helix 5
5
A
149 156Right-handed 310
Helix 6
6
A
165 177Right-handed alpha
Helix 7
7
A
179 181Right-handed 310
Helix 8
8
A
189 191Right-handed 310
Helix 9
9
A
192 203Right-handed alpha
Helix 10
10
A
275 288Right-handed alpha
Helix 11
11
A
305 313Right-handed alpha
Helix 12
12
A
326 332Right-handed alpha
Helix 13
13
A
341 355Right-handed alpha
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There are 3 sheets in PDB entry 2JI4. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
71 75parallel
Strand 3
A
103 107parallel
Strand 4
A
141 145parallel
Strand 5
A
160 163parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
59 63anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
183 187parallel
Strand 4
A
264 272parallel
Strand 5
A
292 300parallel
Strand 6
A
317 321parallel
Strand 7
A
336 339parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il