Analysis of interatomic Contacts of Structural Units in PDB entry:
2JID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JID entry

There are 2 chains in PDB entry 2JID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	PRO 766
B	SER 39	PRO 766

There are 37 helices in PDB entry 2JID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	51	Right-handed alpha
Helix 2	2	A	200	207	Right-handed alpha
Helix 3	3	A	274	276	Right-handed 310
Helix 4	4	A	290	295	Right-handed alpha
Helix 5	5	A	341	344	Right-handed 310
Helix 6	6	A	421	425	Right-handed 310
Helix 7	7	A	446	450	Right-handed 310
Helix 8	8	A	463	465	Right-handed 310
Helix 9	9	A	497	504	Right-handed alpha
Helix 10	10	A	562	570	Right-handed alpha
Helix 11	11	A	587	592	Right-handed alpha
Helix 12	12	A	593	595	Right-handed 310
Helix 13	13	A	600	616	Right-handed alpha
Helix 14	14	A	630	641	Right-handed alpha
Helix 15	15	A	658	662	Right-handed 310
Helix 16	16	A	663	672	Right-handed alpha
Helix 17	17	A	679	686	Right-handed alpha
Helix 18	18	A	688	698	Right-handed 310
Helix 19	19	A	712	726	Right-handed alpha
Helix 20	20	A	744	764	Right-handed alpha
Helix 21	21	B	44	50	Right-handed alpha
Helix 22	22	B	200	207	Right-handed alpha
Helix 23	23	B	341	344	Right-handed 310
Helix 24	24	B	421	425	Right-handed 310
Helix 25	25	B	463	465	Right-handed 310
Helix 26	26	B	497	505	Right-handed alpha
Helix 27	27	B	562	570	Right-handed alpha
Helix 28	28	B	587	592	Right-handed alpha
Helix 29	29	B	593	595	Right-handed 310
Helix 30	30	B	600	615	Right-handed alpha
Helix 31	31	B	630	641	Right-handed alpha
Helix 32	32	B	658	662	Right-handed 310
Helix 33	33	B	663	672	Right-handed alpha
Helix 34	34	B	679	686	Right-handed alpha
Helix 35	35	B	688	697	Right-handed 310
Helix 36	36	B	712	725	Right-handed alpha
Helix 37	37	B	744	763	Right-handed alpha

There are 25 sheets in PDB entry 2JID. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	507	508	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	136	anti-parallel
Strand 4	A	141	142	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	164	167	anti-parallel
Strand 3	A	172	175	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	214	216	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	285	287	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	250	255	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	323	330	anti-parallel
Strand 4	A	345	347	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	323	330	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	364	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	395	396	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	442	444	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	461	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	489	495	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	523	530	anti-parallel
Strand 3	A	516	518	anti-parallel

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There are 8 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	523	530	anti-parallel
Strand 3	A	574	579	anti-parallel
Strand 4	A	540	546	parallel
Strand 5	A	619	629	parallel
Strand 6	A	649	653	parallel
Strand 7	A	699	704	parallel
Strand 8	A	731	734	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	507	508	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	86	90	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	128	136	anti-parallel
Strand 4	B	141	142	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	214	216	anti-parallel
Strand 4	B	222	229	anti-parallel
Strand 5	B	285	287	first strand
Strand 6	B	265	272	anti-parallel
Strand 7	B	222	229	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	250	255	anti-parallel

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There are 7 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	323	330	anti-parallel
Strand 4	B	337	339	anti-parallel
Strand 5	B	323	330	anti-parallel
Strand 6	B	345	347	anti-parallel
Strand 7	B	323	330	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	410	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	438	444	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	461	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	489	495	anti-parallel

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There are 8 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	519	first strand
Strand 2	B	522	530	anti-parallel
Strand 3	B	574	579	anti-parallel
Strand 4	B	540	545	parallel
Strand 5	B	619	629	parallel
Strand 6	B	649	653	parallel
Strand 7	B	701	705	parallel
Strand 8	B	731	735	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JID

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JID