Analysis of interatomic Contacts of Structural Units in PDB entry:
2JII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JII entry

There are 2 chains in PDB entry 2JII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 141MET 472
B
 THR 137MET 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2JII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
141 149Right-handed alpha
Helix 2
2
A
210 222Right-handed alpha
Helix 3
3
A
223 234Right-handed alpha
Helix 4
4
A
266 273Right-handed alpha
Helix 5
5
A
274 277Right-handed 310
Helix 6
6
A
279 300Right-handed alpha
Helix 7
7
A
326 330Right-handed 310
Helix 8
8
A
334 338Right-handed 310
Helix 9
9
A
358 363Right-handed alpha
Helix 10
10
A
368 386Right-handed alpha
Helix 11
11
A
390 394Right-handed 310
Helix 12
12
A
396 410Right-handed alpha
Helix 13
13
A
425 437Right-handed alpha
Helix 14
14
A
445 460Right-handed alpha
Helix 15
15
B
137 148Right-handed alpha
Helix 16
16
B
210 222Right-handed alpha
Helix 17
17
B
223 235Right-handed alpha
Helix 18
18
B
266 272Right-handed alpha
Helix 19
19
B
273 277Right-handed 310
Helix 20
20
B
279 300Right-handed alpha
Helix 21
21
B
326 330Right-handed 310
Helix 22
22
B
334 338Right-handed 310
Helix 23
23
B
358 363Right-handed alpha
Helix 24
24
B
368 386Right-handed alpha
Helix 25
25
B
390 394Right-handed 310
Helix 26
26
B
396 410Right-handed alpha
Helix 27
27
B
425 437Right-handed alpha
Helix 28
28
B
445 460Right-handed alpha
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There are 7 sheets in PDB entry 2JII. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
165 175anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
200 206anti-parallel
Strand 5
A
254 260anti-parallel
Strand 6
A
246 250anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
318 324anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
421 422anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
165 175anti-parallel
Strand 3
B
178 185anti-parallel
Strand 4
B
200 206anti-parallel
Strand 5
B
254 260anti-parallel
Strand 6
B
246 250anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
312 315anti-parallel
Strand 3
B
318 324anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
331 332anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
B
421 422anti-parallel
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