Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIS entry

There are 2 chains in PDB entry 2JIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7LEU 493
B
 LEU 7LEU 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2JIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
48 57Right-handed alpha
Helix 4
4
A
66 81Right-handed alpha
Helix 5
5
A
98 112Right-handed alpha
Helix 6
6
A
121 140Right-handed alpha
Helix 7
7
A
151 168Right-handed alpha
Helix 8
8
A
170 175Right-handed alpha
Helix 9
9
A
176 179Right-handed 310
Helix 10
10
A
192 201Right-handed alpha
Helix 11
11
A
204 206Right-handed 310
Helix 12
12
A
220 234Right-handed alpha
Helix 13
13
A
255 267Right-handed alpha
Helix 14
14
A
276 283Right-handed 310
Helix 15
15
A
286 291Right-handed 310
Helix 16
16
A
292 296Right-handed 310
Helix 17
17
A
323 330Right-handed alpha
Helix 18
18
A
344 348Right-handed 310
Helix 19
19
A
349 353Right-handed 310
Helix 20
20
A
361 397Right-handed alpha
Helix 21
21
A
418 422Right-handed 310
Helix 22
22
A
429 436Right-handed alpha
Helix 23
23
A
436 449Right-handed alpha
Helix 24
24
A
475 491Right-handed alpha
Helix 25
25
B
13 32Right-handed alpha
Helix 26
26
B
34 38Right-handed 310
Helix 27
27
B
48 57Right-handed alpha
Helix 28
28
B
66 81Right-handed alpha
Helix 29
29
B
98 112Right-handed alpha
Helix 30
30
B
121 140Right-handed alpha
Helix 31
31
B
151 168Right-handed alpha
Helix 32
32
B
170 175Right-handed alpha
Helix 33
33
B
191 201Right-handed alpha
Helix 34
34
B
204 206Right-handed 310
Helix 35
35
B
220 234Right-handed alpha
Helix 36
36
B
255 267Right-handed alpha
Helix 37
37
B
276 283Right-handed 310
Helix 38
38
B
286 291Right-handed 310
Helix 39
39
B
292 296Right-handed 310
Helix 40
40
B
323 330Right-handed alpha
Helix 41
41
B
344 348Right-handed 310
Helix 42
42
B
349 353Right-handed 310
Helix 43
43
B
361 396Right-handed alpha
Helix 44
44
B
418 422Right-handed 310
Helix 45
45
B
429 436Right-handed alpha
Helix 46
46
B
436 449Right-handed alpha
Helix 47
47
B
475 491Right-handed alpha
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There are 4 sheets in PDB entry 2JIS. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
452 458parallel
Strand 3
A
461 468anti-parallel
Strand 4
A
411 416anti-parallel
Strand 5
A
401 403anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
298 301anti-parallel
Strand 4
A
269 274parallel
Strand 5
A
237 244parallel
Strand 6
A
182 187parallel
Strand 7
A
208 211parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
452 458parallel
Strand 3
B
461 468anti-parallel
Strand 4
B
411 416anti-parallel
Strand 5
B
401 403anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
298 301anti-parallel
Strand 4
B
269 273parallel
Strand 5
B
237 244parallel
Strand 6
B
182 187parallel
Strand 7
B
208 211parallel
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