Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIV entry

There are 2 chains in PDB entry 2JIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 700ASP 984
B
 PRO 699GLN 982
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2JIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
758 767Right-handed alpha
Helix 2
2
A
798 805Right-handed alpha
Helix 3
3
A
811 830Right-handed alpha
Helix 4
4
A
839 841Right-handed 310
Helix 5
5
A
882 888Right-handed alpha
Helix 6
6
A
895 909Right-handed alpha
Helix 7
7
A
919 929Right-handed alpha
Helix 8
8
A
940 949Right-handed alpha
Helix 9
9
A
954 958Right-handed 310
Helix 10
10
A
960 973Right-handed alpha
Helix 11
11
A
974 978Right-handed 310
Helix 12
12
B
756 765Right-handed alpha
Helix 13
13
B
800 805Right-handed alpha
Helix 14
14
B
810 831Right-handed alpha
Helix 15
15
B
839 843Right-handed 310
Helix 16
16
B
883 888Right-handed alpha
Helix 17
17
B
892 909Right-handed alpha
Helix 18
18
B
919 921Right-handed 310
Helix 19
19
B
922 928Right-handed alpha
Helix 20
20
B
940 951Right-handed alpha
Helix 21
21
B
954 958Right-handed 310
Helix 22
22
B
961 972Right-handed alpha
Helix 23
23
B
973 978Right-handed 310
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There are 4 sheets in PDB entry 2JIV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 706first strand
Strand 2
A
779 782parallel
Strand 3
A
787 791anti-parallel
Strand 4
A
740 747anti-parallel
Strand 5
A
724 731anti-parallel
Strand 6
A
712 719anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
850 853anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
705 706first strand
Strand 2
B
779 782parallel
Strand 3
B
786 791anti-parallel
Strand 4
B
740 747anti-parallel
Strand 5
B
724 731anti-parallel
Strand 6
B
712 720anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 847first strand
Strand 2
B
850 853anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il