Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJ4 entry

There are 6 chains in PDB entry 2JJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8SER 291
B
 ALA 8SER 291
C
 GLU 7SER 291
D
 MET 1ALA 111
E
 MET 1ASN 108
F
 MET 1ALA 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2JJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 19Right-handed alpha
Helix 2
2
A
20 27Right-handed alpha
Helix 3
3
A
38 43Right-handed alpha
Helix 4
4
A
43 61Right-handed alpha
Helix 5
5
A
70 79Right-handed alpha
Helix 6
6
A
95 107Right-handed alpha
Helix 7
7
A
110 122Right-handed alpha
Helix 8
8
A
131 134Right-handed 310
Helix 9
9
A
159 166Right-handed alpha
Helix 10
10
A
187 199Right-handed alpha
Helix 11
11
A
228 238Right-handed alpha
Helix 12
12
A
244 258Right-handed alpha
Helix 13
13
A
272 280Right-handed alpha
Helix 14
14
B
12 19Right-handed alpha
Helix 15
15
B
20 27Right-handed alpha
Helix 16
16
B
38 43Right-handed alpha
Helix 17
17
B
43 61Right-handed alpha
Helix 18
18
B
70 79Right-handed alpha
Helix 19
19
B
95 109Right-handed alpha
Helix 20
20
B
110 122Right-handed alpha
Helix 21
21
B
131 134Right-handed 310
Helix 22
22
B
159 166Right-handed alpha
Helix 23
23
B
187 199Right-handed alpha
Helix 24
24
B
228 238Right-handed alpha
Helix 25
25
B
245 258Right-handed alpha
Helix 26
26
B
272 280Right-handed alpha
Helix 27
27
C
13 19Right-handed alpha
Helix 28
28
C
20 27Right-handed alpha
Helix 29
29
C
38 43Right-handed alpha
Helix 30
30
C
43 61Right-handed alpha
Helix 31
31
C
70 79Right-handed alpha
Helix 32
32
C
95 109Right-handed alpha
Helix 33
33
C
109 122Right-handed alpha
Helix 34
34
C
131 134Right-handed 310
Helix 35
35
C
159 166Right-handed alpha
Helix 36
36
C
187 199Right-handed alpha
Helix 37
37
C
228 239Right-handed alpha
Helix 38
38
C
244 258Right-handed alpha
Helix 39
39
C
272 279Right-handed alpha
Helix 40
40
D
9 11Right-handed 310
Helix 41
41
D
12 23Right-handed alpha
Helix 42
42
D
69 82Right-handed alpha
Helix 43
43
E
9 11Right-handed 310
Helix 44
44
E
12 23Right-handed alpha
Helix 45
45
E
69 82Right-handed alpha
Helix 46
46
F
12 23Right-handed alpha
Helix 47
47
F
69 82Right-handed alpha
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There are 15 sheets in PDB entry 2JJ4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, DA, DB, EA, EB, FA, FB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
169 173parallel
Strand 3
A
63 68parallel
Strand 4
A
31 36parallel
Strand 5
A
203 208parallel
Strand 6
A
262 267parallel
Strand 7
A
285 289anti-parallel
Strand 8
A
226 227parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
91 92anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
183 186parallel
Strand 4
A
175 177anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
169 173parallel
Strand 3
B
63 68parallel
Strand 4
B
31 36parallel
Strand 5
B
203 208parallel
Strand 6
B
262 267parallel
Strand 7
B
285 288anti-parallel
Strand 8
B
226 227parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
91 92anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
183 186parallel
Strand 4
B
175 177anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
169 173parallel
Strand 3
C
63 68parallel
Strand 4
C
31 36parallel
Strand 5
C
203 208parallel
Strand 6
C
262 267parallel
Strand 7
C
285 288anti-parallel
Strand 8
C
226 227parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 88first strand
Strand 2
C
91 92anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 140first strand
Strand 2
C
149 155anti-parallel
Strand 3
C
183 186parallel
Strand 4
C
175 177anti-parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 95first strand
Strand 2
D
2 8anti-parallel
Strand 3
D
56 65anti-parallel
Strand 4
D
28 35anti-parallel
Strand 5
E
28 36anti-parallel
Strand 6
E
56 65anti-parallel
Strand 7
E
2 8anti-parallel
Strand 8
E
90 95anti-parallel
Strand 9
D
98 101anti-parallel
Strand 10
D
107 108anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
49 51anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
49 51anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
107 108anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
29 35first strand
Strand 2
F
56 65anti-parallel
Strand 3
F
2 8anti-parallel
Strand 4
F
89 95anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 46first strand
Strand 2
F
49 51anti-parallel
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