Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JJD entry

There are 6 chains in PDB entry 2JJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 112	ASP 691
B	LYS 111	ASP 691
C	LYS 111	ASP 691
D	TYR 112	ASP 691
E	LYS 111	ASP 691
F	LYS 111	ASP 691

There are114 helices in PDB entry 2JJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	119	127	Right-handed alpha
Helix 2	2	A	138	142	Right-handed 310
Helix 3	3	A	156	163	Right-handed 310
Helix 4	4	A	211	213	Right-handed 310
Helix 5	5	A	214	225	Right-handed alpha
Helix 6	6	A	310	324	Right-handed alpha
Helix 7	7	A	340	359	Right-handed alpha
Helix 8	8	A	362	372	Right-handed alpha
Helix 9	9	A	380	397	Right-handed alpha
Helix 10	10	A	425	435	Right-handed alpha
Helix 11	11	A	443	448	Right-handed alpha
Helix 12	12	A	448	453	Right-handed alpha
Helix 13	13	A	506	517	Right-handed alpha
Helix 14	14	A	604	621	Right-handed alpha
Helix 15	15	A	635	654	Right-handed alpha
Helix 16	16	A	657	667	Right-handed alpha
Helix 17	17	A	675	691	Right-handed alpha
Helix 18	18	B	119	127	Right-handed alpha
Helix 19	19	B	133	140	Right-handed alpha
Helix 20	20	B	152	156	Right-handed 310
Helix 21	21	B	156	163	Right-handed 310
Helix 22	22	B	211	213	Right-handed 310
Helix 23	23	B	214	225	Right-handed alpha
Helix 24	24	B	310	324	Right-handed alpha
Helix 25	25	B	340	359	Right-handed alpha
Helix 26	26	B	362	372	Right-handed alpha
Helix 27	27	B	380	397	Right-handed alpha
Helix 28	28	B	425	435	Right-handed alpha
Helix 29	29	B	448	453	Right-handed alpha
Helix 30	30	B	463	466	Right-handed 310
Helix 31	31	B	503	505	Right-handed 310
Helix 32	32	B	506	517	Right-handed alpha
Helix 33	33	B	604	621	Right-handed alpha
Helix 34	34	B	635	654	Right-handed alpha
Helix 35	35	B	657	667	Right-handed alpha
Helix 36	36	B	675	691	Right-handed alpha
Helix 37	37	C	119	127	Right-handed alpha
Helix 38	38	C	134	140	Right-handed alpha
Helix 39	39	C	156	163	Right-handed 310
Helix 40	40	C	211	213	Right-handed 310
Helix 41	41	C	214	225	Right-handed alpha
Helix 42	42	C	310	324	Right-handed alpha
Helix 43	43	C	340	359	Right-handed alpha
Helix 44	44	C	362	372	Right-handed alpha
Helix 45	45	C	380	397	Right-handed alpha
Helix 46	46	C	425	434	Right-handed alpha
Helix 47	47	C	439	442	Right-handed 310
Helix 48	48	C	443	448	Right-handed alpha
Helix 49	49	C	448	453	Right-handed alpha
Helix 50	50	C	463	465	Right-handed 310
Helix 51	51	C	506	517	Right-handed alpha
Helix 52	52	C	604	622	Right-handed alpha
Helix 53	53	C	635	654	Right-handed alpha
Helix 54	54	C	657	669	Right-handed alpha
Helix 55	55	C	675	691	Right-handed alpha
Helix 56	56	D	119	127	Right-handed alpha
Helix 57	57	D	134	140	Right-handed alpha
Helix 58	58	D	156	163	Right-handed 310
Helix 59	59	D	211	213	Right-handed 310
Helix 60	60	D	214	225	Right-handed alpha
Helix 61	61	D	310	324	Right-handed alpha
Helix 62	62	D	340	359	Right-handed alpha
Helix 63	63	D	362	372	Right-handed alpha
Helix 64	64	D	380	397	Right-handed alpha
Helix 65	65	D	425	434	Right-handed alpha
Helix 66	66	D	439	442	Right-handed 310
Helix 67	67	D	443	448	Right-handed alpha
Helix 68	68	D	448	453	Right-handed alpha
Helix 69	69	D	463	466	Right-handed 310
Helix 70	70	D	506	517	Right-handed alpha
Helix 71	71	D	604	622	Right-handed alpha
Helix 72	72	D	635	654	Right-handed alpha
Helix 73	73	D	657	669	Right-handed alpha
Helix 74	74	D	675	690	Right-handed alpha
Helix 75	75	E	119	127	Right-handed alpha
Helix 76	76	E	132	140	Right-handed alpha
Helix 77	77	E	152	156	Right-handed 310
Helix 78	78	E	156	163	Right-handed 310
Helix 79	79	E	211	213	Right-handed 310
Helix 80	80	E	214	225	Right-handed alpha
Helix 81	81	E	310	324	Right-handed alpha
Helix 82	82	E	340	359	Right-handed alpha
Helix 83	83	E	362	372	Right-handed alpha
Helix 84	84	E	380	397	Right-handed alpha
Helix 85	85	E	425	436	Right-handed alpha
Helix 86	86	E	439	442	Right-handed 310
Helix 87	87	E	443	448	Right-handed alpha
Helix 88	88	E	448	453	Right-handed alpha
Helix 89	89	E	503	505	Right-handed 310
Helix 90	90	E	506	517	Right-handed alpha
Helix 91	91	E	604	621	Right-handed alpha
Helix 92	92	E	635	654	Right-handed alpha
Helix 93	93	E	657	667	Right-handed alpha
Helix 94	94	E	675	690	Right-handed alpha
Helix 95	95	F	119	127	Right-handed alpha
Helix 96	96	F	132	140	Right-handed alpha
Helix 97	97	F	152	156	Right-handed 310
Helix 98	98	F	156	163	Right-handed 310
Helix 99	99	F	211	213	Right-handed 310
Helix 100	100	F	214	225	Right-handed alpha
Helix 101	101	F	310	324	Right-handed alpha
Helix 102	102	F	340	359	Right-handed alpha
Helix 103	103	F	362	372	Right-handed alpha
Helix 104	104	F	380	397	Right-handed alpha
Helix 105	105	F	425	435	Right-handed alpha
Helix 106	106	F	439	442	Right-handed 310
Helix 107	107	F	443	448	Right-handed alpha
Helix 108	108	F	448	453	Right-handed alpha
Helix 109	109	F	503	505	Right-handed 310
Helix 110	110	F	506	517	Right-handed alpha
Helix 111	111	F	604	621	Right-handed alpha
Helix 112	112	F	635	654	Right-handed alpha
Helix 113	113	F	657	667	Right-handed alpha
Helix 114	114	F	675	691	Right-handed alpha

There are 34 sheets in PDB entry 2JJD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	360	361	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	189	197	anti-parallel
Strand 3	A	200	207	anti-parallel
Strand 4	A	331	334	parallel
Strand 5	A	229	232	parallel
Strand 6	A	291	298	parallel
Strand 7	A	272	279	anti-parallel
Strand 8	A	259	268	anti-parallel
Strand 9	A	253	256	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	655	656	anti-parallel

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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	469	first strand
Strand 2	A	481	487	anti-parallel
Strand 3	A	496	499	anti-parallel
Strand 4	A	626	629	parallel
Strand 5	A	521	524	parallel
Strand 6	A	584	592	parallel
Strand 7	A	564	573	anti-parallel
Strand 8	A	551	560	anti-parallel
Strand 9	A	545	548	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	533	534	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	360	361	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	189	197	anti-parallel
Strand 3	B	200	207	anti-parallel
Strand 4	B	331	334	parallel
Strand 5	B	229	232	parallel
Strand 6	B	291	298	parallel
Strand 7	B	272	279	anti-parallel
Strand 8	B	259	268	anti-parallel
Strand 9	B	253	256	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	241	242	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	655	656	anti-parallel

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There are 8 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	487	first strand
Strand 2	B	496	499	anti-parallel
Strand 3	B	626	629	parallel
Strand 4	B	521	524	parallel
Strand 5	B	584	592	parallel
Strand 6	B	564	573	anti-parallel
Strand 7	B	551	560	anti-parallel
Strand 8	B	545	548	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	533	534	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	360	361	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	189	197	anti-parallel
Strand 3	C	200	207	anti-parallel
Strand 4	C	331	334	parallel
Strand 5	C	229	232	parallel
Strand 6	C	291	298	parallel
Strand 7	C	272	279	anti-parallel
Strand 8	C	259	268	anti-parallel
Strand 9	C	253	256	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	403	first strand
Strand 2	C	655	656	anti-parallel

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There are 9 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	469	first strand
Strand 2	C	481	487	anti-parallel
Strand 3	C	496	499	anti-parallel
Strand 4	C	626	629	parallel
Strand 5	C	521	524	parallel
Strand 6	C	584	592	parallel
Strand 7	C	564	573	anti-parallel
Strand 8	C	551	559	anti-parallel
Strand 9	C	545	546	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	530	first strand
Strand 2	C	533	534	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	360	361	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	189	197	anti-parallel
Strand 3	D	200	207	anti-parallel
Strand 4	D	331	334	parallel
Strand 5	D	229	232	parallel
Strand 6	D	291	298	parallel
Strand 7	D	272	279	anti-parallel
Strand 8	D	259	268	anti-parallel
Strand 9	D	253	256	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	241	242	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	655	656	anti-parallel

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There are 8 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	487	first strand
Strand 2	D	496	499	anti-parallel
Strand 3	D	626	629	parallel
Strand 4	D	521	524	parallel
Strand 5	D	584	592	parallel
Strand 6	D	564	573	anti-parallel
Strand 7	D	551	559	anti-parallel
Strand 8	D	545	548	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	533	534	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	360	361	anti-parallel

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There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	189	197	anti-parallel
Strand 3	E	200	207	anti-parallel
Strand 4	E	331	334	parallel
Strand 5	E	229	232	parallel
Strand 6	E	291	298	parallel
Strand 7	E	272	279	anti-parallel
Strand 8	E	259	268	anti-parallel
Strand 9	E	253	256	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	238	first strand
Strand 2	E	241	242	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	403	first strand
Strand 2	E	655	656	anti-parallel

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There are 8 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	484	487	first strand
Strand 2	E	496	499	anti-parallel
Strand 3	E	626	629	parallel
Strand 4	E	521	524	parallel
Strand 5	E	584	592	parallel
Strand 6	E	564	573	anti-parallel
Strand 7	E	551	560	anti-parallel
Strand 8	E	545	548	anti-parallel

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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	529	530	first strand
Strand 2	E	533	534	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	360	361	anti-parallel

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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	189	197	anti-parallel
Strand 3	F	200	207	anti-parallel
Strand 4	F	331	334	parallel
Strand 5	F	229	232	parallel
Strand 6	F	291	298	parallel
Strand 7	F	272	279	anti-parallel
Strand 8	F	259	268	anti-parallel
Strand 9	F	253	256	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	238	first strand
Strand 2	F	241	242	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	403	first strand
Strand 2	F	655	656	anti-parallel

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There are 8 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	484	487	first strand
Strand 2	F	496	499	anti-parallel
Strand 3	F	626	629	parallel
Strand 4	F	521	524	parallel
Strand 5	F	584	591	parallel
Strand 6	F	565	573	anti-parallel
Strand 7	F	551	559	anti-parallel
Strand 8	F	545	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJD