Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJH entry

There is 1 chain in PDB entry 2JJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15THR 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2JJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 18Right-handed 310
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
60 65Right-handed alpha
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
78 90Right-handed alpha
Helix 6
6
A
100 115Right-handed alpha
Helix 7
7
A
127 149Right-handed alpha
Helix 8
8
A
173 177Right-handed 310
Helix 9
9
A
181 186Right-handed alpha
Helix 10
10
A
206 228Right-handed alpha
Helix 11
11
A
250 264Right-handed alpha
Helix 12
12
A
285 290Right-handed alpha
Helix 13
13
A
299 303Right-handed 310
Helix 14
14
A
311 316Right-handed 310
Helix 15
15
A
334 351Right-handed alpha
Helix 16
16
A
352 375Right-handed alpha
Helix 17
17
A
395 409Right-handed alpha
Helix 18
18
A
430 449Right-handed alpha
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There are 4 sheets in PDB entry 2JJH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
55 58anti-parallel
Strand 3
A
411 412parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
305 309anti-parallel
Strand 3
A
295 298anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
232 237parallel
Strand 6
A
159 163parallel
Strand 7
A
195 196parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
247 248anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 385first strand
Strand 2
A
388 392anti-parallel
Strand 3
A
420 423anti-parallel
Strand 4
A
414 416anti-parallel
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