Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JJM entry

There are 12 chains in PDB entry 2JJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ARG 374
B	LYS 2	ARG 374
C	LYS 2	ARG 374
D	LYS 2	ARG 374
E	LYS 2	ARG 374
F	LYS 2	ARG 374
G	LYS 2	ARG 374
H	LYS 2	ARG 374
I	LYS 2	ARG 374
J	LYS 2	ARG 374
K	LYS 2	ARG 374
L	LYS 2	ARG 374

There are192 helices in PDB entry 2JJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	30	Right-handed alpha
Helix 2	2	A	69	86	Right-handed alpha
Helix 3	3	A	97	109	Right-handed alpha
Helix 4	4	A	120	126	Right-handed alpha
Helix 5	5	A	133	144	Right-handed alpha
Helix 6	6	A	151	162	Right-handed alpha
Helix 7	7	A	185	192	Right-handed alpha
Helix 8	8	A	208	211	Right-handed 310
Helix 9	9	A	212	226	Right-handed alpha
Helix 10	10	A	239	249	Right-handed alpha
Helix 11	11	A	252	255	Right-handed 310
Helix 12	12	A	265	271	Right-handed alpha
Helix 13	13	A	285	294	Right-handed alpha
Helix 14	14	A	323	337	Right-handed alpha
Helix 15	15	A	337	356	Right-handed alpha
Helix 16	16	A	357	372	Right-handed alpha
Helix 17	17	B	14	30	Right-handed alpha
Helix 18	18	B	69	86	Right-handed alpha
Helix 19	19	B	97	109	Right-handed alpha
Helix 20	20	B	120	126	Right-handed alpha
Helix 21	21	B	133	144	Right-handed alpha
Helix 22	22	B	151	162	Right-handed alpha
Helix 23	23	B	185	192	Right-handed alpha
Helix 24	24	B	208	211	Right-handed 310
Helix 25	25	B	212	226	Right-handed alpha
Helix 26	26	B	239	249	Right-handed alpha
Helix 27	27	B	252	255	Right-handed 310
Helix 28	28	B	265	271	Right-handed alpha
Helix 29	29	B	285	294	Right-handed alpha
Helix 30	30	B	323	337	Right-handed alpha
Helix 31	31	B	337	356	Right-handed alpha
Helix 32	32	B	357	372	Right-handed alpha
Helix 33	33	C	14	30	Right-handed alpha
Helix 34	34	C	69	86	Right-handed alpha
Helix 35	35	C	97	109	Right-handed alpha
Helix 36	36	C	120	126	Right-handed alpha
Helix 37	37	C	133	144	Right-handed alpha
Helix 38	38	C	151	162	Right-handed alpha
Helix 39	39	C	185	192	Right-handed alpha
Helix 40	40	C	208	211	Right-handed 310
Helix 41	41	C	212	226	Right-handed alpha
Helix 42	42	C	239	249	Right-handed alpha
Helix 43	43	C	252	255	Right-handed 310
Helix 44	44	C	265	271	Right-handed alpha
Helix 45	45	C	285	294	Right-handed alpha
Helix 46	46	C	323	337	Right-handed alpha
Helix 47	47	C	337	356	Right-handed alpha
Helix 48	48	C	357	372	Right-handed alpha
Helix 49	49	D	14	30	Right-handed alpha
Helix 50	50	D	69	86	Right-handed alpha
Helix 51	51	D	97	109	Right-handed alpha
Helix 52	52	D	120	126	Right-handed alpha
Helix 53	53	D	133	144	Right-handed alpha
Helix 54	54	D	151	162	Right-handed alpha
Helix 55	55	D	185	192	Right-handed alpha
Helix 56	56	D	208	211	Right-handed 310
Helix 57	57	D	212	226	Right-handed alpha
Helix 58	58	D	239	249	Right-handed alpha
Helix 59	59	D	252	255	Right-handed 310
Helix 60	60	D	265	271	Right-handed alpha
Helix 61	61	D	285	294	Right-handed alpha
Helix 62	62	D	323	337	Right-handed alpha
Helix 63	63	D	337	356	Right-handed alpha
Helix 64	64	D	357	372	Right-handed alpha
Helix 65	65	E	14	30	Right-handed alpha
Helix 66	66	E	69	86	Right-handed alpha
Helix 67	67	E	97	109	Right-handed alpha
Helix 68	68	E	120	126	Right-handed alpha
Helix 69	69	E	133	144	Right-handed alpha
Helix 70	70	E	151	162	Right-handed alpha
Helix 71	71	E	185	192	Right-handed alpha
Helix 72	72	E	208	211	Right-handed 310
Helix 73	73	E	212	226	Right-handed alpha
Helix 74	74	E	239	249	Right-handed alpha
Helix 75	75	E	252	255	Right-handed 310
Helix 76	76	E	265	271	Right-handed alpha
Helix 77	77	E	285	294	Right-handed alpha
Helix 78	78	E	323	337	Right-handed alpha
Helix 79	79	E	337	356	Right-handed alpha
Helix 80	80	E	357	372	Right-handed alpha
Helix 81	81	F	14	30	Right-handed alpha
Helix 82	82	F	69	86	Right-handed alpha
Helix 83	83	F	97	109	Right-handed alpha
Helix 84	84	F	120	126	Right-handed alpha
Helix 85	85	F	133	144	Right-handed alpha
Helix 86	86	F	151	162	Right-handed alpha
Helix 87	87	F	185	192	Right-handed alpha
Helix 88	88	F	208	211	Right-handed 310
Helix 89	89	F	212	226	Right-handed alpha
Helix 90	90	F	239	249	Right-handed alpha
Helix 91	91	F	252	255	Right-handed 310
Helix 92	92	F	265	271	Right-handed alpha
Helix 93	93	F	285	294	Right-handed alpha
Helix 94	94	F	323	337	Right-handed alpha
Helix 95	95	F	337	356	Right-handed alpha
Helix 96	96	F	357	372	Right-handed alpha
Helix 97	97	G	14	30	Right-handed alpha
Helix 98	98	G	69	86	Right-handed alpha
Helix 99	99	G	97	109	Right-handed alpha
Helix 100	100	G	120	126	Right-handed alpha
Helix 101	101	G	133	144	Right-handed alpha
Helix 102	102	G	151	162	Right-handed alpha
Helix 103	103	G	185	192	Right-handed alpha
Helix 104	104	G	208	211	Right-handed 310
Helix 105	105	G	212	226	Right-handed alpha
Helix 106	106	G	239	249	Right-handed alpha
Helix 107	107	G	252	255	Right-handed 310
Helix 108	108	G	265	271	Right-handed alpha
Helix 109	109	G	285	294	Right-handed alpha
Helix 110	110	G	323	337	Right-handed alpha
Helix 111	111	G	337	356	Right-handed alpha
Helix 112	112	G	357	372	Right-handed alpha
Helix 113	113	H	14	30	Right-handed alpha
Helix 114	114	H	69	86	Right-handed alpha
Helix 115	115	H	97	109	Right-handed alpha
Helix 116	116	H	120	126	Right-handed alpha
Helix 117	117	H	133	144	Right-handed alpha
Helix 118	118	H	151	162	Right-handed alpha
Helix 119	119	H	185	192	Right-handed alpha
Helix 120	120	H	208	211	Right-handed 310
Helix 121	121	H	212	226	Right-handed alpha
Helix 122	122	H	239	249	Right-handed alpha
Helix 123	123	H	252	255	Right-handed 310
Helix 124	124	H	265	271	Right-handed alpha
Helix 125	125	H	285	294	Right-handed alpha
Helix 126	126	H	323	337	Right-handed alpha
Helix 127	127	H	337	356	Right-handed alpha
Helix 128	128	H	357	372	Right-handed alpha
Helix 129	129	I	14	30	Right-handed alpha
Helix 130	130	I	69	86	Right-handed alpha
Helix 131	131	I	97	109	Right-handed alpha
Helix 132	132	I	120	126	Right-handed alpha
Helix 133	133	I	133	144	Right-handed alpha
Helix 134	134	I	151	162	Right-handed alpha
Helix 135	135	I	185	192	Right-handed alpha
Helix 136	136	I	208	211	Right-handed 310
Helix 137	137	I	212	226	Right-handed alpha
Helix 138	138	I	239	249	Right-handed alpha
Helix 139	139	I	252	255	Right-handed 310
Helix 140	140	I	265	271	Right-handed alpha
Helix 141	141	I	285	294	Right-handed alpha
Helix 142	142	I	323	337	Right-handed alpha
Helix 143	143	I	337	356	Right-handed alpha
Helix 144	144	I	357	372	Right-handed alpha
Helix 145	145	J	14	30	Right-handed alpha
Helix 146	146	J	69	86	Right-handed alpha
Helix 147	147	J	97	109	Right-handed alpha
Helix 148	148	J	120	126	Right-handed alpha
Helix 149	149	J	133	144	Right-handed alpha
Helix 150	150	J	151	162	Right-handed alpha
Helix 151	151	J	185	192	Right-handed alpha
Helix 152	152	J	208	211	Right-handed 310
Helix 153	153	J	212	226	Right-handed alpha
Helix 154	154	J	239	249	Right-handed alpha
Helix 155	155	J	252	255	Right-handed 310
Helix 156	156	J	265	271	Right-handed alpha
Helix 157	157	J	285	294	Right-handed alpha
Helix 158	158	J	323	337	Right-handed alpha
Helix 159	159	J	337	356	Right-handed alpha
Helix 160	160	J	357	372	Right-handed alpha
Helix 161	161	K	14	30	Right-handed alpha
Helix 162	162	K	69	86	Right-handed alpha
Helix 163	163	K	97	109	Right-handed alpha
Helix 164	164	K	120	126	Right-handed alpha
Helix 165	165	K	133	144	Right-handed alpha
Helix 166	166	K	151	162	Right-handed alpha
Helix 167	167	K	185	192	Right-handed alpha
Helix 168	168	K	208	211	Right-handed 310
Helix 169	169	K	212	226	Right-handed alpha
Helix 170	170	K	239	249	Right-handed alpha
Helix 171	171	K	252	255	Right-handed 310
Helix 172	172	K	265	271	Right-handed alpha
Helix 173	173	K	285	294	Right-handed alpha
Helix 174	174	K	323	337	Right-handed alpha
Helix 175	175	K	337	356	Right-handed alpha
Helix 176	176	K	357	372	Right-handed alpha
Helix 177	177	L	14	30	Right-handed alpha
Helix 178	178	L	69	86	Right-handed alpha
Helix 179	179	L	97	109	Right-handed alpha
Helix 180	180	L	120	126	Right-handed alpha
Helix 181	181	L	133	144	Right-handed alpha
Helix 182	182	L	151	162	Right-handed alpha
Helix 183	183	L	185	192	Right-handed alpha
Helix 184	184	L	208	211	Right-handed 310
Helix 185	185	L	212	226	Right-handed alpha
Helix 186	186	L	239	249	Right-handed alpha
Helix 187	187	L	252	255	Right-handed 310
Helix 188	188	L	265	271	Right-handed alpha
Helix 189	189	L	285	294	Right-handed alpha
Helix 190	190	L	323	337	Right-handed alpha
Helix 191	191	L	337	356	Right-handed alpha
Helix 192	192	L	357	372	Right-handed alpha

There are 24 sheets in PDB entry 2JJM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, KA, KB, LA, LB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	33	37	parallel
Strand 3	A	4	8	parallel
Strand 4	A	89	92	parallel
Strand 5	A	114	118	parallel
Strand 6	A	146	149	parallel
Strand 7	A	168	170	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	200	204	parallel
Strand 3	A	274	277	parallel
Strand 4	A	298	301	parallel
Strand 5	A	316	319	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	33	37	parallel
Strand 3	B	4	8	parallel
Strand 4	B	89	92	parallel
Strand 5	B	114	118	parallel
Strand 6	B	146	149	parallel
Strand 7	B	168	170	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	234	first strand
Strand 2	B	200	204	parallel
Strand 3	B	274	277	parallel
Strand 4	B	298	301	parallel
Strand 5	B	316	319	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	33	37	parallel
Strand 3	C	4	8	parallel
Strand 4	C	89	92	parallel
Strand 5	C	114	118	parallel
Strand 6	C	146	149	parallel
Strand 7	C	168	170	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	234	first strand
Strand 2	C	200	204	parallel
Strand 3	C	274	277	parallel
Strand 4	C	298	301	parallel
Strand 5	C	316	319	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	33	37	parallel
Strand 3	D	4	8	parallel
Strand 4	D	89	92	parallel
Strand 5	D	114	118	parallel
Strand 6	D	146	149	parallel
Strand 7	D	168	170	parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	234	first strand
Strand 2	D	200	204	parallel
Strand 3	D	274	277	parallel
Strand 4	D	298	301	parallel
Strand 5	D	316	319	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	55	first strand
Strand 2	E	33	37	parallel
Strand 3	E	4	8	parallel
Strand 4	E	89	92	parallel
Strand 5	E	114	118	parallel
Strand 6	E	146	149	parallel
Strand 7	E	168	170	parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	234	first strand
Strand 2	E	200	204	parallel
Strand 3	E	274	277	parallel
Strand 4	E	298	301	parallel
Strand 5	E	316	319	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	55	first strand
Strand 2	F	33	37	parallel
Strand 3	F	4	8	parallel
Strand 4	F	89	92	parallel
Strand 5	F	114	118	parallel
Strand 6	F	146	149	parallel
Strand 7	F	168	170	parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	234	first strand
Strand 2	F	200	204	parallel
Strand 3	F	274	277	parallel
Strand 4	F	298	301	parallel
Strand 5	F	316	319	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	55	first strand
Strand 2	G	33	37	parallel
Strand 3	G	4	8	parallel
Strand 4	G	89	92	parallel
Strand 5	G	114	118	parallel
Strand 6	G	146	149	parallel
Strand 7	G	168	170	parallel

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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	234	first strand
Strand 2	G	200	204	parallel
Strand 3	G	274	277	parallel
Strand 4	G	298	301	parallel
Strand 5	G	316	319	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	55	first strand
Strand 2	H	33	37	parallel
Strand 3	H	4	8	parallel
Strand 4	H	89	92	parallel
Strand 5	H	114	118	parallel
Strand 6	H	146	149	parallel
Strand 7	H	168	170	parallel

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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	230	234	first strand
Strand 2	H	200	204	parallel
Strand 3	H	274	277	parallel
Strand 4	H	298	301	parallel
Strand 5	H	316	319	parallel

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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	55	first strand
Strand 2	I	33	37	parallel
Strand 3	I	4	8	parallel
Strand 4	I	89	92	parallel
Strand 5	I	114	118	parallel
Strand 6	I	146	149	parallel
Strand 7	I	168	170	parallel

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There are 5 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	230	234	first strand
Strand 2	I	200	204	parallel
Strand 3	I	274	277	parallel
Strand 4	I	298	301	parallel
Strand 5	I	316	319	parallel

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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	55	first strand
Strand 2	J	33	37	parallel
Strand 3	J	4	8	parallel
Strand 4	J	89	92	parallel
Strand 5	J	114	118	parallel
Strand 6	J	146	149	parallel
Strand 7	J	168	170	parallel

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There are 5 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	230	234	first strand
Strand 2	J	200	204	parallel
Strand 3	J	274	277	parallel
Strand 4	J	298	301	parallel
Strand 5	J	316	319	parallel

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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	55	first strand
Strand 2	K	33	37	parallel
Strand 3	K	4	8	parallel
Strand 4	K	89	92	parallel
Strand 5	K	114	118	parallel
Strand 6	K	146	149	parallel
Strand 7	K	168	170	parallel

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There are 5 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	230	234	first strand
Strand 2	K	200	204	parallel
Strand 3	K	274	277	parallel
Strand 4	K	298	301	parallel
Strand 5	K	316	319	parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	55	first strand
Strand 2	L	33	37	parallel
Strand 3	L	4	8	parallel
Strand 4	L	89	92	parallel
Strand 5	L	114	118	parallel
Strand 6	L	146	149	parallel
Strand 7	L	168	170	parallel

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There are 5 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	230	234	first strand
Strand 2	L	200	204	parallel
Strand 3	L	274	277	parallel
Strand 4	L	298	301	parallel
Strand 5	L	316	319	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJM