Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJQ entry

There is 1 chain in PDB entry 2JJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2JJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 93Right-handed alpha
Helix 2
2
A
141 159Right-handed alpha
Helix 3
3
A
254 269Right-handed alpha
Helix 4
4
A
282 291Right-handed alpha
Helix 5
5
A
301 316Right-handed alpha
Helix 6
6
A
347 358Right-handed alpha
Helix 7
7
A
368 379Right-handed alpha
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There are 5 sheets in PDB entry 2JJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
29 37anti-parallel
Strand 3
A
42 51anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
14 16anti-parallel
Strand 3
A
19 21anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
382 389parallel
Strand 3
A
399 405anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
336 339parallel
Strand 6
A
273 277parallel
Strand 7
A
294 299parallel
Strand 8
A
319 323parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
186 192anti-parallel
Strand 6
A
208 213parallel
Strand 7
A
224 230anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
241 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il