Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJX entry

There are 3 chains in PDB entry 2JJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2HIS 245
B
 ARG 2HIS 245
C
 ARG 2HIS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2JJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
57 64Right-handed alpha
Helix 4
4
A
67 94Right-handed alpha
Helix 5
5
A
114 124Right-handed alpha
Helix 6
6
A
141 152Right-handed alpha
Helix 7
7
A
186 192Right-handed alpha
Helix 8
8
A
198 209Right-handed alpha
Helix 9
9
A
221 228Right-handed alpha
Helix 10
10
B
12 17Right-handed 310
Helix 11
11
B
25 41Right-handed alpha
Helix 12
12
B
57 64Right-handed alpha
Helix 13
13
B
67 94Right-handed alpha
Helix 14
14
B
114 124Right-handed alpha
Helix 15
15
B
141 152Right-handed alpha
Helix 16
16
B
186 192Right-handed alpha
Helix 17
17
B
198 209Right-handed alpha
Helix 18
18
B
221 228Right-handed alpha
Helix 19
19
C
12 17Right-handed 310
Helix 20
20
C
25 41Right-handed alpha
Helix 21
21
C
57 64Right-handed alpha
Helix 22
22
C
67 94Right-handed alpha
Helix 23
23
C
114 124Right-handed alpha
Helix 24
24
C
141 152Right-handed alpha
Helix 25
25
C
186 192Right-handed alpha
Helix 26
26
C
198 209Right-handed alpha
Helix 27
27
C
221 228Right-handed alpha
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There are 3 sheets in PDB entry 2JJX. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
98 102parallel
Strand 3
A
127 131parallel
Strand 4
A
45 50parallel
Strand 5
A
6 11parallel
Strand 6
A
156 161parallel
Strand 7
A
212 216parallel
Strand 8
A
234 237anti-parallel
Strand 9
A
183 185parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
98 102parallel
Strand 3
B
127 131parallel
Strand 4
B
45 50parallel
Strand 5
B
6 11parallel
Strand 6
B
156 161parallel
Strand 7
B
212 216parallel
Strand 8
B
234 237anti-parallel
Strand 9
B
183 185parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
98 102parallel
Strand 3
C
127 131parallel
Strand 4
C
45 50parallel
Strand 5
C
6 11parallel
Strand 6
C
156 161parallel
Strand 7
C
212 216parallel
Strand 8
C
234 237anti-parallel
Strand 9
C
183 185parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il