Analysis of interatomic Contacts of Structural Units in PDB entry:
2JK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JK0 entry

There are 8 chains in PDB entry 2JK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	TYR 327
B	ASN 3	TYR 327
C	ASN 3	TYR 327
D	ASN 3	TYR 327
E	ASN 3	TYR 327
F	ASN 3	TYR 327
G	ASN 3	TYR 327
H	ASN 3	TYR 327

There are105 helices in PDB entry 2JK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	18	Right-handed 310
Helix 2	2	A	35	42	Right-handed alpha
Helix 3	3	A	43	49	Right-handed 310
Helix 4	4	A	61	65	Right-handed 310
Helix 5	5	A	66	82	Right-handed alpha
Helix 6	6	A	100	109	Right-handed alpha
Helix 7	7	A	130	144	Right-handed alpha
Helix 8	8	A	145	148	Right-handed 310
Helix 9	9	A	203	207	Right-handed 310
Helix 10	10	A	231	240	Right-handed alpha
Helix 11	11	A	256	269	Right-handed alpha
Helix 12	12	A	299	311	Right-handed alpha
Helix 13	13	A	316	327	Right-handed alpha
Helix 14	14	B	15	18	Right-handed 310
Helix 15	15	B	35	43	Right-handed alpha
Helix 16	16	B	44	49	Right-handed 310
Helix 17	17	B	61	65	Right-handed 310
Helix 18	18	B	66	82	Right-handed alpha
Helix 19	19	B	100	109	Right-handed alpha
Helix 20	20	B	130	143	Right-handed alpha
Helix 21	21	B	144	148	Right-handed 310
Helix 22	22	B	203	207	Right-handed 310
Helix 23	23	B	231	240	Right-handed alpha
Helix 24	24	B	256	269	Right-handed alpha
Helix 25	25	B	299	314	Right-handed alpha
Helix 26	26	B	316	327	Right-handed alpha
Helix 27	27	C	15	18	Right-handed 310
Helix 28	28	C	35	42	Right-handed alpha
Helix 29	29	C	43	49	Right-handed 310
Helix 30	30	C	61	65	Right-handed 310
Helix 31	31	C	66	82	Right-handed alpha
Helix 32	32	C	100	109	Right-handed alpha
Helix 33	33	C	130	144	Right-handed alpha
Helix 34	34	C	145	148	Right-handed 310
Helix 35	35	C	203	207	Right-handed 310
Helix 36	36	C	231	240	Right-handed alpha
Helix 37	37	C	256	269	Right-handed alpha
Helix 38	38	C	299	311	Right-handed alpha
Helix 39	39	C	316	327	Right-handed alpha
Helix 40	40	D	15	17	Right-handed 310
Helix 41	41	D	35	43	Right-handed alpha
Helix 42	42	D	44	49	Right-handed 310
Helix 43	43	D	61	65	Right-handed 310
Helix 44	44	D	66	82	Right-handed alpha
Helix 45	45	D	100	109	Right-handed alpha
Helix 46	46	D	130	144	Right-handed alpha
Helix 47	47	D	145	148	Right-handed 310
Helix 48	48	D	203	207	Right-handed 310
Helix 49	49	D	231	240	Right-handed alpha
Helix 50	50	D	256	269	Right-handed alpha
Helix 51	51	D	299	314	Right-handed alpha
Helix 52	52	D	316	327	Right-handed alpha
Helix 53	53	E	14	18	Right-handed 310
Helix 54	54	E	35	39	Right-handed 310
Helix 55	55	E	43	49	Right-handed 310
Helix 56	56	E	61	65	Right-handed 310
Helix 57	57	E	66	82	Right-handed alpha
Helix 58	58	E	100	109	Right-handed alpha
Helix 59	59	E	130	144	Right-handed alpha
Helix 60	60	E	145	148	Right-handed 310
Helix 61	61	E	203	207	Right-handed 310
Helix 62	62	E	231	240	Right-handed alpha
Helix 63	63	E	249	254	Right-handed alpha
Helix 64	64	E	256	268	Right-handed alpha
Helix 65	65	E	299	311	Right-handed alpha
Helix 66	66	E	316	327	Right-handed alpha
Helix 67	67	F	14	18	Right-handed 310
Helix 68	68	F	35	42	Right-handed alpha
Helix 69	69	F	43	49	Right-handed 310
Helix 70	70	F	61	65	Right-handed 310
Helix 71	71	F	66	83	Right-handed alpha
Helix 72	72	F	100	109	Right-handed alpha
Helix 73	73	F	130	144	Right-handed alpha
Helix 74	74	F	145	148	Right-handed 310
Helix 75	75	F	203	207	Right-handed 310
Helix 76	76	F	231	240	Right-handed alpha
Helix 77	77	F	256	269	Right-handed alpha
Helix 78	78	F	299	311	Right-handed alpha
Helix 79	79	F	316	327	Right-handed alpha
Helix 80	80	G	35	42	Right-handed alpha
Helix 81	81	G	43	49	Right-handed 310
Helix 82	82	G	61	65	Right-handed 310
Helix 83	83	G	66	82	Right-handed alpha
Helix 84	84	G	99	109	Right-handed alpha
Helix 85	85	G	130	144	Right-handed alpha
Helix 86	86	G	145	148	Right-handed 310
Helix 87	87	G	203	207	Right-handed 310
Helix 88	88	G	231	240	Right-handed alpha
Helix 89	89	G	256	269	Right-handed alpha
Helix 90	90	G	299	314	Right-handed alpha
Helix 91	91	G	316	327	Right-handed alpha
Helix 92	92	H	14	18	Right-handed 310
Helix 93	93	H	35	43	Right-handed alpha
Helix 94	94	H	44	49	Right-handed 310
Helix 95	95	H	61	65	Right-handed 310
Helix 96	96	H	66	82	Right-handed alpha
Helix 97	97	H	94	98	Right-handed 310
Helix 98	98	H	100	109	Right-handed alpha
Helix 99	99	H	130	143	Right-handed alpha
Helix 100	100	H	144	148	Right-handed 310
Helix 101	101	H	203	207	Right-handed 310
Helix 102	102	H	231	240	Right-handed alpha
Helix 103	103	H	256	269	Right-handed alpha
Helix 104	104	H	299	311	Right-handed alpha
Helix 105	105	H	316	327	Right-handed alpha

There are 28 sheets in PDB entry 2JK0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, HA, HB, HC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	60	first strand
Strand 2	A	6	13	parallel
Strand 3	A	88	92	parallel
Strand 4	A	115	118	parallel
Strand 5	A	153	156	parallel
Strand 6	A	159	162	anti-parallel
Strand 7	A	186	189	anti-parallel
Strand 8	A	192	195	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	177	178	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	D	197	199	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	244	249	parallel
Strand 3	A	272	277	parallel
Strand 4	A	293	294	parallel

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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	60	first strand
Strand 2	B	6	13	parallel
Strand 3	B	88	92	parallel
Strand 4	B	115	118	parallel
Strand 5	B	153	156	parallel
Strand 6	B	159	162	anti-parallel
Strand 7	B	186	189	anti-parallel
Strand 8	B	192	195	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	177	178	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	C	197	199	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	244	249	parallel
Strand 3	B	272	277	parallel
Strand 4	B	293	294	parallel

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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	60	first strand
Strand 2	C	6	13	parallel
Strand 3	C	88	92	parallel
Strand 4	C	115	118	parallel
Strand 5	C	153	156	parallel
Strand 6	C	159	162	anti-parallel
Strand 7	C	186	188	anti-parallel
Strand 8	C	193	195	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	177	178	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	244	249	parallel
Strand 3	C	272	277	parallel
Strand 4	C	293	294	parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	60	first strand
Strand 2	D	6	13	parallel
Strand 3	D	88	92	parallel
Strand 4	D	115	118	parallel
Strand 5	D	153	156	parallel
Strand 6	D	159	162	anti-parallel
Strand 7	D	186	189	anti-parallel
Strand 8	D	192	195	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	177	178	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	224	first strand
Strand 2	D	244	249	parallel
Strand 3	D	272	277	parallel
Strand 4	D	293	294	parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	56	first strand
Strand 2	E	6	11	parallel
Strand 3	E	88	92	parallel
Strand 4	E	115	118	parallel
Strand 5	E	153	156	parallel
Strand 6	E	159	162	anti-parallel
Strand 7	E	186	188	anti-parallel
Strand 8	E	193	195	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	177	178	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	H	197	199	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	224	first strand
Strand 2	E	244	248	parallel
Strand 3	E	272	275	parallel
Strand 4	E	293	294	parallel

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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	56	first strand
Strand 2	F	6	11	parallel
Strand 3	F	88	92	parallel
Strand 4	F	115	118	parallel
Strand 5	F	152	156	parallel
Strand 6	F	159	162	anti-parallel
Strand 7	F	186	189	anti-parallel
Strand 8	F	192	195	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	177	178	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	199	first strand
Strand 2	G	197	199	anti-parallel

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There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	224	first strand
Strand 2	F	244	249	parallel
Strand 3	F	272	277	parallel
Strand 4	F	293	294	parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	60	first strand
Strand 2	G	6	13	parallel
Strand 3	G	88	92	parallel
Strand 4	G	115	118	parallel
Strand 5	G	153	156	parallel
Strand 6	G	159	162	anti-parallel
Strand 7	G	186	189	anti-parallel
Strand 8	G	192	195	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	168	first strand
Strand 2	G	177	178	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	224	first strand
Strand 2	G	244	249	parallel
Strand 3	G	272	277	parallel
Strand 4	G	293	294	parallel

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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	56	first strand
Strand 2	H	6	11	parallel
Strand 3	H	88	92	parallel
Strand 4	H	115	118	parallel
Strand 5	H	153	156	parallel
Strand 6	H	159	162	anti-parallel
Strand 7	H	186	188	anti-parallel
Strand 8	H	193	195	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	177	178	anti-parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	224	first strand
Strand 2	H	244	249	parallel
Strand 3	H	272	277	parallel
Strand 4	H	293	294	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JK0