Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKD entry

There are 2 chains in PDB entry 2JKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 49HIS 207
B
 LYS 51HIS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2JKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 68Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
191 195Right-handed 310
Helix 4
4
B
60 68Right-handed alpha
Helix 5
5
B
71 75Right-handed 310
Helix 6
6
B
87 91Right-handed 310
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There are 4 sheets in PDB entry 2JKD. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
77 84anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
185 187anti-parallel
Strand 5
A
166 167anti-parallel
Strand 6
A
170 171anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
103 108parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
151 158anti-parallel
Strand 5
A
178 180anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
77 84anti-parallel
Strand 3
B
197 204anti-parallel
Strand 4
B
185 187anti-parallel
Strand 5
B
166 167anti-parallel
Strand 6
B
170 171anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
103 108parallel
Strand 3
B
141 148anti-parallel
Strand 4
B
151 158anti-parallel
Strand 5
B
178 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il