Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKI entry

There are 6 chains in PDB entry 2JKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 217
B
 HIS -5LYS 217
C
 GLU 4LYS 217
S
 LYS 151GLY 240
T
 LYS 151GLY 240
U
 LYS 151GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2JKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
30 53Right-handed alpha
Helix 3
3
A
54 59Right-handed 310
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
115 120Right-handed 310
Helix 7
7
A
124 131Right-handed 310
Helix 8
8
A
183 187Right-handed 310
Helix 9
9
A
188 200Right-handed alpha
Helix 10
10
B
11 24Right-handed alpha
Helix 11
11
B
30 53Right-handed alpha
Helix 12
12
B
54 59Right-handed 310
Helix 13
13
B
87 95Right-handed alpha
Helix 14
14
B
101 112Right-handed alpha
Helix 15
15
B
115 120Right-handed 310
Helix 16
16
B
124 131Right-handed 310
Helix 17
17
B
183 187Right-handed 310
Helix 18
18
B
188 200Right-handed alpha
Helix 19
19
C
11 24Right-handed alpha
Helix 20
20
C
30 53Right-handed alpha
Helix 21
21
C
54 59Right-handed 310
Helix 22
22
C
87 95Right-handed alpha
Helix 23
23
C
101 112Right-handed alpha
Helix 24
24
C
115 120Right-handed 310
Helix 25
25
C
124 131Right-handed 310
Helix 26
26
C
183 187Right-handed 310
Helix 27
27
C
188 200Right-handed alpha
Helix 28
28
S
173 175Right-handed 310
Helix 29
29
S
209 213Right-handed 310
Helix 30
30
T
173 175Right-handed 310
Helix 31
31
T
209 213Right-handed 310
Helix 32
32
U
173 175Right-handed 310
Helix 33
33
U
209 213Right-handed 310
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There are 9 sheets in PDB entry 2JKI. Click on sheet of interest to get list of strands forming it: AA, BA, CA, SA, SB, TA, TB, UA, UB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
148 152anti-parallel
Strand 4
A
133 141anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
76 81anti-parallel
Strand 7
A
66 71anti-parallel
Strand 8
A
207 209parallel
Strand 9
A
215 216anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
157 162anti-parallel
Strand 3
B
148 152anti-parallel
Strand 4
B
133 141anti-parallel
Strand 5
B
172 179anti-parallel
Strand 6
B
76 81anti-parallel
Strand 7
B
66 71anti-parallel
Strand 8
B
207 209parallel
Strand 9
B
215 216anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
157 162anti-parallel
Strand 3
C
148 152anti-parallel
Strand 4
C
133 141anti-parallel
Strand 5
C
172 179anti-parallel
Strand 6
C
76 81anti-parallel
Strand 7
C
66 71anti-parallel
Strand 8
C
207 209parallel
Strand 9
C
214 216anti-parallel
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There are 4 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
153 158first strand
Strand 2
S
162 168anti-parallel
Strand 3
S
222 227anti-parallel
Strand 4
S
214 217anti-parallel
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There are 3 strands in SB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
177 181first strand
Strand 2
S
186 190anti-parallel
Strand 3
S
198 200anti-parallel
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There are 4 strands in TA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
153 158first strand
Strand 2
T
162 168anti-parallel
Strand 3
T
222 227anti-parallel
Strand 4
T
214 217anti-parallel
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There are 3 strands in TB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
177 181first strand
Strand 2
T
186 190anti-parallel
Strand 3
T
198 200anti-parallel
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There are 4 strands in UA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
153 158first strand
Strand 2
U
162 168anti-parallel
Strand 3
U
222 227anti-parallel
Strand 4
U
214 217anti-parallel
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There are 3 strands in UB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
177 181first strand
Strand 2
U
186 190anti-parallel
Strand 3
U
198 200anti-parallel
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