Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKP entry

There are 2 chains in PDB entry 2JKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22VAL 726
B
 GLN 22VAL 726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2JKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 89Right-handed 310
Helix 2
2
A
134 137Right-handed 310
Helix 3
3
A
204 213Right-handed alpha
Helix 4
4
A
297 303Right-handed alpha
Helix 5
5
A
304 309Right-handed alpha
Helix 6
6
A
317 321Right-handed 310
Helix 7
7
A
331 337Right-handed alpha
Helix 8
8
A
356 360Right-handed 310
Helix 9
9
A
369 383Right-handed alpha
Helix 10
10
A
396 400Right-handed 310
Helix 11
11
A
419 430Right-handed alpha
Helix 12
12
A
443 461Right-handed alpha
Helix 13
13
A
483 500Right-handed alpha
Helix 14
14
A
514 518Right-handed 310
Helix 15
15
A
530 536Right-handed 310
Helix 16
16
A
542 546Right-handed 310
Helix 17
17
A
546 550Right-handed 310
Helix 18
18
A
568 571Right-handed 310
Helix 19
19
A
582 593Right-handed alpha
Helix 20
20
A
603 609Right-handed alpha
Helix 21
21
A
610 620Right-handed alpha
Helix 22
22
B
87 89Right-handed 310
Helix 23
23
B
134 137Right-handed 310
Helix 24
24
B
204 213Right-handed alpha
Helix 25
25
B
296 303Right-handed alpha
Helix 26
26
B
304 309Right-handed alpha
Helix 27
27
B
317 321Right-handed 310
Helix 28
28
B
331 336Right-handed alpha
Helix 29
29
B
356 360Right-handed 310
Helix 30
30
B
369 383Right-handed alpha
Helix 31
31
B
396 400Right-handed 310
Helix 32
32
B
419 430Right-handed alpha
Helix 33
33
B
443 450Right-handed alpha
Helix 34
34
B
450 461Right-handed alpha
Helix 35
35
B
483 500Right-handed alpha
Helix 36
36
B
514 518Right-handed 310
Helix 37
37
B
530 536Right-handed 310
Helix 38
38
B
542 546Right-handed 310
Helix 39
39
B
546 550Right-handed 310
Helix 40
40
B
568 571Right-handed 310
Helix 41
41
B
582 593Right-handed alpha
Helix 42
42
B
603 608Right-handed alpha
Helix 43
43
B
610 620Right-handed alpha
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There are 16 sheets in PDB entry 2JKP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
53 60anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
63 65anti-parallel
Strand 3
A
165 171anti-parallel
Strand 4
A
279 281anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 110first strand
Strand 2
A
120 133anti-parallel
Strand 3
A
138 147anti-parallel
Strand 4
A
150 157anti-parallel
Strand 5
A
288 294anti-parallel
Strand 6
A
240 246anti-parallel
Strand 7
A
231 234anti-parallel
Strand 8
A
182 185anti-parallel
Strand 9
A
198 201anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 110first strand
Strand 2
A
120 133anti-parallel
Strand 3
A
138 147anti-parallel
Strand 4
A
150 157anti-parallel
Strand 5
A
284 285anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
226 227anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
503 506parallel
Strand 3
A
463 469parallel
Strand 4
A
433 439parallel
Strand 5
A
387 390parallel
Strand 6
A
325 330parallel
Strand 7
A
597 599parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 633first strand
Strand 2
A
637 644anti-parallel
Strand 3
A
650 656anti-parallel
Strand 4
A
718 725anti-parallel
Strand 5
A
676 683anti-parallel
Strand 6
A
696 703anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 666first strand
Strand 2
A
708 713anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
53 60anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
63 65anti-parallel
Strand 3
B
165 171anti-parallel
Strand 4
B
279 281anti-parallel
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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 110first strand
Strand 2
B
120 133anti-parallel
Strand 3
B
138 147anti-parallel
Strand 4
B
150 157anti-parallel
Strand 5
B
288 294anti-parallel
Strand 6
B
240 246anti-parallel
Strand 7
B
231 234anti-parallel
Strand 8
B
182 185anti-parallel
Strand 9
B
198 201anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 110first strand
Strand 2
B
120 133anti-parallel
Strand 3
B
138 147anti-parallel
Strand 4
B
150 157anti-parallel
Strand 5
B
284 285anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
254 259anti-parallel
Strand 4
B
226 227anti-parallel
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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 525first strand
Strand 2
B
503 506parallel
Strand 3
B
465 469parallel
Strand 4
B
433 439parallel
Strand 5
B
387 390parallel
Strand 6
B
325 330parallel
Strand 7
B
597 599parallel
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There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
624 633first strand
Strand 2
B
637 644anti-parallel
Strand 3
B
650 656anti-parallel
Strand 4
B
718 725anti-parallel
Strand 5
B
676 683anti-parallel
Strand 6
B
696 703anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
661 666first strand
Strand 2
B
708 713anti-parallel
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