Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKR entry

There are 3 chains in PDB entry 2JKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3SER 623
B
 LYS 12VAL 582
E
 LYS 12ILE 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are175 helices in PDB entry 2JKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
27 41Right-handed alpha
Helix 3
3
A
51 67Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
87 101Right-handed alpha
Helix 6
6
A
105 122Right-handed alpha
Helix 7
7
A
124 139Right-handed alpha
Helix 8
8
A
140 148Right-handed alpha
Helix 9
9
A
149 157Right-handed alpha
Helix 10
10
A
161 179Right-handed alpha
Helix 11
11
A
180 183Right-handed 310
Helix 12
12
A
187 194Right-handed alpha
Helix 13
13
A
195 198Right-handed 310
Helix 14
14
A
200 215Right-handed alpha
Helix 15
15
A
218 223Right-handed alpha
Helix 16
16
A
224 239Right-handed alpha
Helix 17
17
A
254 266Right-handed alpha
Helix 18
18
A
273 293Right-handed alpha
Helix 19
19
A
299 321Right-handed alpha
Helix 20
20
A
323 340Right-handed alpha
Helix 21
21
A
343 357Right-handed alpha
Helix 22
22
A
364 368Right-handed 310
Helix 23
23
A
369 380Right-handed alpha
Helix 24
24
A
382 395Right-handed alpha
Helix 25
25
A
401 415Right-handed alpha
Helix 26
26
A
417 436Right-handed alpha
Helix 27
27
A
438 452Right-handed alpha
Helix 28
28
A
453 457Right-handed 310
Helix 29
29
A
458 472Right-handed alpha
Helix 30
30
A
475 487Right-handed alpha
Helix 31
31
A
493 507Right-handed alpha
Helix 32
32
A
508 512Right-handed 310
Helix 33
33
A
514 517Right-handed 310
Helix 34
34
A
518 531Right-handed alpha
Helix 35
35
A
534 552Right-handed alpha
Helix 36
36
A
555 564Right-handed alpha
Helix 37
37
A
565 570Right-handed alpha
Helix 38
38
A
573 590Right-handed alpha
Helix 39
39
A
591 599Right-handed alpha
Helix 40
40
B
15 24Right-handed alpha
Helix 41
41
B
26 40Right-handed alpha
Helix 42
42
B
50 56Right-handed alpha
Helix 43
43
B
62 75Right-handed alpha
Helix 44
44
B
80 85Right-handed alpha
Helix 45
45
B
87 97Right-handed alpha
Helix 46
46
B
99 111Right-handed alpha
Helix 47
47
B
117 130Right-handed alpha
Helix 48
48
B
134 159Right-handed alpha
Helix 49
49
B
160 169Right-handed alpha
Helix 50
50
B
173 191Right-handed alpha
Helix 51
51
B
202 211Right-handed alpha
Helix 52
52
B
218 227Right-handed alpha
Helix 53
53
B
233 242Right-handed alpha
Helix 54
54
B
243 248Right-handed 310
Helix 55
55
B
252 267Right-handed alpha
Helix 56
56
B
273 283Right-handed alpha
Helix 57
57
B
284 290Right-handed alpha
Helix 58
58
B
295 313Right-handed alpha
Helix 59
59
B
314 317Right-handed 310
Helix 60
60
B
318 325Right-handed 310
Helix 61
61
B
331 346Right-handed alpha
Helix 62
62
B
350 364Right-handed alpha
Helix 63
63
B
366 384Right-handed alpha
Helix 64
64
B
387 401Right-handed alpha
Helix 65
65
B
403 419Right-handed alpha
Helix 66
66
B
428 433Right-handed alpha
Helix 67
67
B
441 454Right-handed alpha
Helix 68
68
B
455 460Right-handed 310
Helix 69
69
B
461 471Right-handed alpha
Helix 70
70
B
472 476Right-handed 310
Helix 71
71
B
477 495Right-handed alpha
Helix 72
72
B
499 513Right-handed alpha
Helix 73
73
B
516 533Right-handed alpha
Helix 74
74
B
533 542Right-handed alpha
Helix 75
75
B
556 565Right-handed alpha
Helix 76
76
B
569 574Right-handed alpha
Helix 77
77
B
577 581Right-handed 310
Helix 78
78
E
15 24Right-handed alpha
Helix 79
79
E
26 40Right-handed alpha
Helix 80
80
E
50 56Right-handed alpha
Helix 81
81
E
62 75Right-handed alpha
Helix 82
82
E
80 85Right-handed alpha
Helix 83
83
E
87 97Right-handed alpha
Helix 84
84
E
99 111Right-handed alpha
Helix 85
85
E
117 130Right-handed alpha
Helix 86
86
E
134 159Right-handed alpha
Helix 87
87
E
160 169Right-handed alpha
Helix 88
88
E
173 191Right-handed alpha
Helix 89
89
E
202 211Right-handed alpha
Helix 90
90
E
218 227Right-handed alpha
Helix 91
91
E
233 242Right-handed alpha
Helix 92
92
E
243 248Right-handed 310
Helix 93
93
E
252 267Right-handed alpha
Helix 94
94
E
273 283Right-handed alpha
Helix 95
95
E
284 290Right-handed alpha
Helix 96
96
E
295 313Right-handed alpha
Helix 97
97
E
314 318Right-handed 310
Helix 98
98
E
320 325Right-handed 310
Helix 99
99
E
331 346Right-handed alpha
Helix 100
100
E
350 364Right-handed alpha
Helix 101
101
E
366 384Right-handed alpha
Helix 102
102
E
387 401Right-handed alpha
Helix 103
103
E
403 419Right-handed alpha
Helix 104
104
E
428 433Right-handed alpha
Helix 105
105
E
441 454Right-handed alpha
Helix 106
106
E
455 460Right-handed 310
Helix 107
107
E
461 472Right-handed alpha
Helix 108
108
E
473 476Right-handed 310
Helix 109
109
E
477 495Right-handed alpha
Helix 110
110
E
499 513Right-handed alpha
Helix 111
111
E
516 533Right-handed alpha
Helix 112
112
E
533 542Right-handed alpha
Helix 113
113
E
556 565Right-handed alpha
Helix 114
114
E
569 574Right-handed alpha
Helix 115
115
E
577 581Right-handed 310
Helix 116
116
I
24 40Right-handed alpha
Helix 117
117
I
76 95Right-handed alpha
Helix 118
118
I
99 106Right-handed alpha
Helix 119
119
I
106 117Right-handed alpha
Helix 120
120
I
127 138Right-handed alpha
Helix 121
121
L
10 22Right-handed alpha
Helix 122
122
L
27 41Right-handed alpha
Helix 123
123
L
51 67Right-handed alpha
Helix 124
124
L
75 83Right-handed alpha
Helix 125
125
L
87 101Right-handed alpha
Helix 126
126
L
105 122Right-handed alpha
Helix 127
127
L
124 139Right-handed alpha
Helix 128
128
L
140 148Right-handed alpha
Helix 129
129
L
149 157Right-handed alpha
Helix 130
130
L
161 179Right-handed alpha
Helix 131
131
L
187 194Right-handed alpha
Helix 132
132
L
195 198Right-handed 310
Helix 133
133
L
200 215Right-handed alpha
Helix 134
134
L
218 223Right-handed alpha
Helix 135
135
L
224 237Right-handed alpha
Helix 136
136
L
254 266Right-handed alpha
Helix 137
137
L
273 293Right-handed alpha
Helix 138
138
L
299 321Right-handed alpha
Helix 139
139
L
323 340Right-handed alpha
Helix 140
140
L
343 357Right-handed alpha
Helix 141
141
L
364 368Right-handed 310
Helix 142
142
L
369 380Right-handed alpha
Helix 143
143
L
382 395Right-handed alpha
Helix 144
144
L
401 415Right-handed alpha
Helix 145
145
L
417 436Right-handed alpha
Helix 146
146
L
438 452Right-handed alpha
Helix 147
147
L
453 457Right-handed 310
Helix 148
148
L
458 472Right-handed alpha
Helix 149
149
L
475 487Right-handed alpha
Helix 150
150
L
493 507Right-handed alpha
Helix 151
151
L
508 512Right-handed 310
Helix 152
152
L
514 517Right-handed 310
Helix 153
153
L
518 531Right-handed alpha
Helix 154
154
L
534 552Right-handed alpha
Helix 155
155
L
555 561Right-handed alpha
Helix 156
156
L
565 570Right-handed alpha
Helix 157
157
L
573 590Right-handed alpha
Helix 158
158
L
591 599Right-handed alpha
Helix 159
159
M
26 34Right-handed alpha
Helix 160
160
M
74 92Right-handed alpha
Helix 161
161
M
97 103Right-handed alpha
Helix 162
162
M
104 115Right-handed alpha
Helix 163
163
M
346 348Right-handed 310
Helix 164
164
M
414 418Right-handed 310
Helix 165
165
S
24 40Right-handed alpha
Helix 166
166
S
76 95Right-handed alpha
Helix 167
167
S
99 106Right-handed alpha
Helix 168
168
S
106 117Right-handed alpha
Helix 169
169
S
127 138Right-handed alpha
Helix 170
170
U
26 34Right-handed alpha
Helix 171
171
U
74 94Right-handed alpha
Helix 172
172
U
97 103Right-handed alpha
Helix 173
173
U
104 115Right-handed alpha
Helix 174
174
U
346 348Right-handed 310
Helix 175
175
U
414 418Right-handed 310
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There are 19 sheets in PDB entry 2JKR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, IA, IB, LA, LB, LC, MA, MB, MC, MD, ME, SA, SB, UA, UB, UC, UD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
252 253anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 614first strand
Strand 2
M
330 335anti-parallel
Strand 3
M
363 372anti-parallel
Strand 4
M
300 309anti-parallel
Strand 5
M
287 292anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 614first strand
Strand 2
M
330 335anti-parallel
Strand 3
M
363 372anti-parallel
Strand 4
M
300 309anti-parallel
Strand 5
M
295 296anti-parallel
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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
14 19first strand
Strand 2
I
2 9anti-parallel
Strand 3
I
65 71anti-parallel
Strand 4
I
55 62anti-parallel
Strand 5
I
49 52anti-parallel
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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
118 119first strand
Strand 2
I
122 123anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
248 249first strand
Strand 2
L
252 253anti-parallel
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There are 5 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
611 614first strand
Strand 2
U
330 335anti-parallel
Strand 3
U
363 372anti-parallel
Strand 4
U
300 309anti-parallel
Strand 5
U
287 292anti-parallel
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There are 5 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
611 614first strand
Strand 2
U
330 335anti-parallel
Strand 3
U
363 372anti-parallel
Strand 4
U
300 309anti-parallel
Strand 5
U
295 296anti-parallel
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There are 5 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
14 19first strand
Strand 2
M
4 8anti-parallel
Strand 3
M
64 69anti-parallel
Strand 4
M
54 59anti-parallel
Strand 5
M
47 49anti-parallel
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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
116 117first strand
Strand 2
M
120 121anti-parallel
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There are 4 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
245 248first strand
Strand 2
M
270 279anti-parallel
Strand 3
M
191 197anti-parallel
Strand 4
M
172 185anti-parallel
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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
245 248first strand
Strand 2
M
270 279anti-parallel
Strand 3
M
200 205anti-parallel
Strand 4
M
172 185anti-parallel
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There are 4 strands in ME sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
252 253first strand
Strand 2
M
263 265anti-parallel
Strand 3
M
211 216anti-parallel
Strand 4
M
401 407anti-parallel
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There are 5 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
14 19first strand
Strand 2
S
2 9anti-parallel
Strand 3
S
65 71anti-parallel
Strand 4
S
55 62anti-parallel
Strand 5
S
49 52anti-parallel
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There are 2 strands in SB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
118 119first strand
Strand 2
S
122 123anti-parallel
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There are 5 strands in UA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
14 19first strand
Strand 2
U
4 8anti-parallel
Strand 3
U
64 69anti-parallel
Strand 4
U
54 59anti-parallel
Strand 5
U
47 49anti-parallel
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There are 2 strands in UB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
116 117first strand
Strand 2
U
120 121anti-parallel
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There are 8 strands in UC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
245 248first strand
Strand 2
U
270 279anti-parallel
Strand 3
U
341 345first strand
Strand 4
U
350 359anti-parallel
Strand 5
U
316 325anti-parallel
Strand 6
U
386 392anti-parallel
Strand 7
U
419 433anti-parallel
Strand 8
U
172 185parallel
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There are 4 strands in UD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
252 253first strand
Strand 2
U
263 265anti-parallel
Strand 3
U
211 216anti-parallel
Strand 4
U
401 407anti-parallel
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