Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKY entry

There are 2 chains in PDB entry 2JKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ILE 214
B
 ASP 5ILE 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2JKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
37 39Right-handed 310
Helix 4
4
A
40 52Right-handed alpha
Helix 5
5
A
116 137Right-handed alpha
Helix 6
6
A
144 148Right-handed 310
Helix 7
7
A
168 173Right-handed alpha
Helix 8
8
A
191 195Right-handed 310
Helix 9
9
A
197 208Right-handed alpha
Helix 10
10
B
10 26Right-handed alpha
Helix 11
11
B
37 52Right-handed alpha
Helix 12
12
B
93 98Right-handed alpha
Helix 13
13
B
116 137Right-handed alpha
Helix 14
14
B
144 148Right-handed 310
Helix 15
15
B
168 173Right-handed alpha
Helix 16
16
B
191 195Right-handed 310
Helix 17
17
B
197 209Right-handed alpha
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There are 5 sheets in PDB entry 2JKY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
188 190parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
32 35parallel
Strand 3
A
105 113parallel
Strand 4
A
150 160parallel
Strand 5
A
178 185parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
86 87anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
189 190parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
61 69anti-parallel
Strand 3
B
32 36parallel
Strand 4
B
105 113parallel
Strand 5
B
150 159parallel
Strand 6
B
178 184parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il