Analysis of interatomic Contacts of Structural Units in PDB entry:
2JL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JL9 entry

There are 3 chains in PDB entry 2JL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 663
B
 ARG 3PRO 663
C
 ARG 3PRO 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 2JL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
21 30Right-handed alpha
Helix 3
3
A
47 65Right-handed alpha
Helix 4
4
A
84 87Right-handed 310
Helix 5
5
A
105 112Right-handed alpha
Helix 6
6
A
120 135Right-handed alpha
Helix 7
7
A
159 173Right-handed alpha
Helix 8
8
A
173 183Right-handed alpha
Helix 9
9
A
185 194Right-handed alpha
Helix 10
10
A
229 236Right-handed alpha
Helix 11
11
A
250 256Right-handed alpha
Helix 12
12
A
276 297Right-handed alpha
Helix 13
13
A
298 303Right-handed alpha
Helix 14
14
A
306 315Right-handed alpha
Helix 15
15
A
327 332Right-handed alpha
Helix 16
16
A
333 348Right-handed alpha
Helix 17
17
A
350 360Right-handed alpha
Helix 18
18
A
397 419Right-handed alpha
Helix 19
19
A
420 426Right-handed 310
Helix 20
20
A
428 441Right-handed alpha
Helix 21
21
A
464 478Right-handed alpha
Helix 22
22
A
517 527Right-handed alpha
Helix 23
23
A
538 542Right-handed 310
Helix 24
24
A
546 550Right-handed 310
Helix 25
25
A
551 559Right-handed alpha
Helix 26
26
A
563 580Right-handed alpha
Helix 27
27
A
582 602Right-handed alpha
Helix 28
28
A
610 614Right-handed 310
Helix 29
29
A
615 624Right-handed alpha
Helix 30
30
A
625 629Right-handed 310
Helix 31
31
A
633 637Right-handed 310
Helix 32
32
A
638 645Right-handed alpha
Helix 33
33
A
650 659Right-handed alpha
Helix 34
34
B
11 16Right-handed alpha
Helix 35
35
B
21 30Right-handed alpha
Helix 36
36
B
47 65Right-handed alpha
Helix 37
37
B
84 87Right-handed 310
Helix 38
38
B
105 111Right-handed alpha
Helix 39
39
B
120 135Right-handed alpha
Helix 40
40
B
159 173Right-handed alpha
Helix 41
41
B
173 183Right-handed alpha
Helix 42
42
B
185 194Right-handed alpha
Helix 43
43
B
229 236Right-handed alpha
Helix 44
44
B
250 256Right-handed alpha
Helix 45
45
B
276 297Right-handed alpha
Helix 46
46
B
298 303Right-handed alpha
Helix 47
47
B
306 315Right-handed alpha
Helix 48
48
B
327 332Right-handed alpha
Helix 49
49
B
333 348Right-handed alpha
Helix 50
50
B
350 360Right-handed alpha
Helix 51
51
B
397 419Right-handed alpha
Helix 52
52
B
420 426Right-handed 310
Helix 53
53
B
428 441Right-handed alpha
Helix 54
54
B
463 478Right-handed alpha
Helix 55
55
B
517 527Right-handed alpha
Helix 56
56
B
538 542Right-handed 310
Helix 57
57
B
546 550Right-handed 310
Helix 58
58
B
551 559Right-handed alpha
Helix 59
59
B
563 580Right-handed alpha
Helix 60
60
B
582 599Right-handed alpha
Helix 61
61
B
615 624Right-handed alpha
Helix 62
62
B
625 629Right-handed 310
Helix 63
63
B
633 637Right-handed 310
Helix 64
64
B
638 645Right-handed alpha
Helix 65
65
B
650 659Right-handed alpha
Helix 66
66
C
11 16Right-handed alpha
Helix 67
67
C
21 30Right-handed alpha
Helix 68
68
C
47 65Right-handed alpha
Helix 69
69
C
84 87Right-handed 310
Helix 70
70
C
105 111Right-handed alpha
Helix 71
71
C
120 135Right-handed alpha
Helix 72
72
C
159 173Right-handed alpha
Helix 73
73
C
173 183Right-handed alpha
Helix 74
74
C
185 194Right-handed alpha
Helix 75
75
C
229 236Right-handed alpha
Helix 76
76
C
250 256Right-handed alpha
Helix 77
77
C
276 297Right-handed alpha
Helix 78
78
C
298 303Right-handed alpha
Helix 79
79
C
306 315Right-handed alpha
Helix 80
80
C
327 332Right-handed alpha
Helix 81
81
C
333 348Right-handed alpha
Helix 82
82
C
350 360Right-handed alpha
Helix 83
83
C
397 418Right-handed alpha
Helix 84
84
C
419 426Right-handed 310
Helix 85
85
C
428 441Right-handed alpha
Helix 86
86
C
463 478Right-handed alpha
Helix 87
87
C
517 527Right-handed alpha
Helix 88
88
C
538 542Right-handed 310
Helix 89
89
C
546 550Right-handed 310
Helix 90
90
C
551 559Right-handed alpha
Helix 91
91
C
563 580Right-handed alpha
Helix 92
92
C
582 599Right-handed alpha
Helix 93
93
C
615 624Right-handed alpha
Helix 94
94
C
625 629Right-handed 310
Helix 95
95
C
633 637Right-handed 310
Helix 96
96
C
638 645Right-handed alpha
Helix 97
97
C
650 659Right-handed alpha
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There are 21 sheets in PDB entry 2JL9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
377 379anti-parallel
Strand 3
A
365 367anti-parallel
Strand 4
A
199 206parallel
Strand 5
A
265 274anti-parallel
Strand 6
A
89 94parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
646 647anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
220 222anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
242 244anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 324first strand
Strand 2
A
454 459anti-parallel
Strand 3
A
446 451anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
499 502anti-parallel
Strand 3
A
513 516anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
377 379anti-parallel
Strand 3
B
365 367anti-parallel
Strand 4
B
199 206parallel
Strand 5
B
265 274anti-parallel
Strand 6
B
89 94parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 44anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
646 647anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
220 222anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
242 244anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 324first strand
Strand 2
B
454 459anti-parallel
Strand 3
B
446 451anti-parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 496first strand
Strand 2
B
499 502anti-parallel
Strand 3
B
513 516anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
377 379anti-parallel
Strand 3
C
365 367anti-parallel
Strand 4
C
199 206parallel
Strand 5
C
265 274anti-parallel
Strand 6
C
89 94parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
43 44anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 146first strand
Strand 2
C
646 649anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 213first strand
Strand 2
C
220 222anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 228first strand
Strand 2
C
242 244anti-parallel
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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 324first strand
Strand 2
C
454 459anti-parallel
Strand 3
C
446 451anti-parallel
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There are 3 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
495 496first strand
Strand 2
C
499 502anti-parallel
Strand 3
C
513 516anti-parallel
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