Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLA entry

There are 4 chains in PDB entry 2JLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 556
B
 MSE 1LEU 556
C
 MSE 1LEU 556
D
 MSE 1LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 2JLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
54 70Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 97Right-handed alpha
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
144 158Right-handed alpha
Helix 8
8
A
182 188Right-handed alpha
Helix 9
9
A
189 195Right-handed 310
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
230 245Right-handed alpha
Helix 12
12
A
262 267Right-handed alpha
Helix 13
13
A
269 277Right-handed alpha
Helix 14
14
A
291 301Right-handed alpha
Helix 15
15
A
329 337Right-handed alpha
Helix 16
16
A
347 362Right-handed alpha
Helix 17
17
A
368 376Right-handed alpha
Helix 18
18
A
377 380Right-handed 310
Helix 19
19
A
391 401Right-handed alpha
Helix 20
20
A
420 433Right-handed alpha
Helix 21
21
A
442 448Right-handed alpha
Helix 22
22
A
451 456Right-handed alpha
Helix 23
23
A
473 478Right-handed alpha
Helix 24
24
A
481 483Right-handed 310
Helix 25
25
A
484 489Right-handed alpha
Helix 26
26
A
497 504Right-handed alpha
Helix 27
27
A
513 523Right-handed alpha
Helix 28
28
A
540 555Right-handed alpha
Helix 29
29
B
2 20Right-handed alpha
Helix 30
30
B
34 43Right-handed alpha
Helix 31
31
B
54 70Right-handed alpha
Helix 32
32
B
80 85Right-handed alpha
Helix 33
33
B
86 97Right-handed alpha
Helix 34
34
B
108 112Right-handed 310
Helix 35
35
B
144 158Right-handed alpha
Helix 36
36
B
182 188Right-handed alpha
Helix 37
37
B
189 195Right-handed 310
Helix 38
38
B
213 218Right-handed alpha
Helix 39
39
B
230 245Right-handed alpha
Helix 40
40
B
262 267Right-handed alpha
Helix 41
41
B
269 276Right-handed alpha
Helix 42
42
B
277 279Right-handed 310
Helix 43
43
B
291 301Right-handed alpha
Helix 44
44
B
329 337Right-handed alpha
Helix 45
45
B
347 362Right-handed alpha
Helix 46
46
B
368 375Right-handed alpha
Helix 47
47
B
376 380Right-handed 310
Helix 48
48
B
391 401Right-handed alpha
Helix 49
49
B
420 433Right-handed alpha
Helix 50
50
B
442 448Right-handed alpha
Helix 51
51
B
449 457Right-handed 310
Helix 52
52
B
473 478Right-handed alpha
Helix 53
53
B
481 483Right-handed 310
Helix 54
54
B
484 489Right-handed alpha
Helix 55
55
B
497 505Right-handed alpha
Helix 56
56
B
513 525Right-handed alpha
Helix 57
57
B
540 554Right-handed alpha
Helix 58
58
C
2 20Right-handed alpha
Helix 59
59
C
34 44Right-handed alpha
Helix 60
60
C
54 70Right-handed alpha
Helix 61
61
C
80 85Right-handed alpha
Helix 62
62
C
86 97Right-handed alpha
Helix 63
63
C
108 112Right-handed 310
Helix 64
64
C
144 158Right-handed alpha
Helix 65
65
C
182 188Right-handed alpha
Helix 66
66
C
189 195Right-handed 310
Helix 67
67
C
213 218Right-handed alpha
Helix 68
68
C
230 245Right-handed alpha
Helix 69
69
C
262 267Right-handed alpha
Helix 70
70
C
269 277Right-handed alpha
Helix 71
71
C
291 301Right-handed alpha
Helix 72
72
C
329 337Right-handed alpha
Helix 73
73
C
347 362Right-handed alpha
Helix 74
74
C
368 376Right-handed alpha
Helix 75
75
C
377 380Right-handed 310
Helix 76
76
C
391 401Right-handed alpha
Helix 77
77
C
420 433Right-handed alpha
Helix 78
78
C
442 448Right-handed alpha
Helix 79
79
C
449 457Right-handed 310
Helix 80
80
C
473 478Right-handed alpha
Helix 81
81
C
481 483Right-handed 310
Helix 82
82
C
484 489Right-handed alpha
Helix 83
83
C
497 504Right-handed alpha
Helix 84
84
C
513 525Right-handed alpha
Helix 85
85
C
540 555Right-handed alpha
Helix 86
86
D
2 20Right-handed alpha
Helix 87
87
D
34 44Right-handed alpha
Helix 88
88
D
54 70Right-handed alpha
Helix 89
89
D
80 85Right-handed alpha
Helix 90
90
D
86 97Right-handed alpha
Helix 91
91
D
108 112Right-handed 310
Helix 92
92
D
144 158Right-handed alpha
Helix 93
93
D
182 188Right-handed alpha
Helix 94
94
D
189 195Right-handed 310
Helix 95
95
D
213 218Right-handed alpha
Helix 96
96
D
230 245Right-handed alpha
Helix 97
97
D
262 267Right-handed alpha
Helix 98
98
D
269 277Right-handed alpha
Helix 99
99
D
291 301Right-handed alpha
Helix 100
100
D
329 337Right-handed alpha
Helix 101
101
D
348 363Right-handed alpha
Helix 102
102
D
368 375Right-handed alpha
Helix 103
103
D
376 380Right-handed 310
Helix 104
104
D
391 401Right-handed alpha
Helix 105
105
D
420 433Right-handed alpha
Helix 106
106
D
442 448Right-handed alpha
Helix 107
107
D
449 457Right-handed 310
Helix 108
108
D
473 478Right-handed alpha
Helix 109
109
D
481 483Right-handed 310
Helix 110
110
D
484 489Right-handed alpha
Helix 111
111
D
497 504Right-handed alpha
Helix 112
112
D
513 525Right-handed alpha
Helix 113
113
D
540 555Right-handed alpha
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There are 14 sheets in PDB entry 2JLA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, A, DB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
25 28parallel
Strand 3
A
73 77parallel
Strand 4
A
100 106parallel
Strand 5
A
164 169parallel
Strand 6
A
132 135parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
D
323 327parallel
Strand 3
D
305 310parallel
Strand 4
D
281 285parallel
Strand 5
D
222 226parallel
Strand 6
D
248 250parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
D
205 207anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
222 226parallel
Strand 3
A
281 285parallel
Strand 4
A
305 310parallel
Strand 5
A
323 327parallel
Strand 6
D
200 201parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
385 388parallel
Strand 3
A
436 441parallel
Strand 4
A
462 468parallel
Strand 5
A
530 536parallel
Strand 6
A
507 509parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
25 28parallel
Strand 3
B
73 77parallel
Strand 4
B
100 106parallel
Strand 5
B
164 169parallel
Strand 6
B
132 135parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
C
323 327parallel
Strand 3
C
305 310parallel
Strand 4
C
281 285parallel
Strand 5
C
222 226parallel
Strand 6
C
248 250parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
C
205 207anti-parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
222 226parallel
Strand 3
B
281 285parallel
Strand 4
B
305 310parallel
Strand 5
B
323 327parallel
Strand 6
C
200 201parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
385 388parallel
Strand 3
B
436 441parallel
Strand 4
B
462 468parallel
Strand 5
B
530 536parallel
Strand 6
B
507 509parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
25 28parallel
Strand 3
C
73 77parallel
Strand 4
C
100 106parallel
Strand 5
C
164 169parallel
Strand 6
C
132 135parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
409 411first strand
Strand 2
C
385 388parallel
Strand 3
C
436 441parallel
Strand 4
C
462 468parallel
Strand 5
C
530 536parallel
Strand 6
C
507 509parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
25 28parallel
Strand 3
D
73 77parallel
Strand 4
D
100 106parallel
Strand 5
D
164 169parallel
Strand 6
D
132 135parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
409 410first strand
Strand 2
D
385 388parallel
Strand 3
D
436 441parallel
Strand 4
D
462 468parallel
Strand 5
D
530 536parallel
Strand 6
D
507 509parallel
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