Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLC entry

There are 2 chains in PDB entry 2JLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 556
B
 MET 1LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2JLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
54 70Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 97Right-handed alpha
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
144 158Right-handed alpha
Helix 8
8
A
182 188Right-handed alpha
Helix 9
9
A
189 195Right-handed 310
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
230 245Right-handed alpha
Helix 12
12
A
262 267Right-handed alpha
Helix 13
13
A
269 277Right-handed alpha
Helix 14
14
A
291 301Right-handed alpha
Helix 15
15
A
329 337Right-handed alpha
Helix 16
16
A
347 362Right-handed alpha
Helix 17
17
A
368 376Right-handed alpha
Helix 18
18
A
377 380Right-handed 310
Helix 19
19
A
391 401Right-handed alpha
Helix 20
20
A
420 433Right-handed alpha
Helix 21
21
A
442 448Right-handed alpha
Helix 22
22
A
449 457Right-handed 310
Helix 23
23
A
473 478Right-handed alpha
Helix 24
24
A
481 489Right-handed alpha
Helix 25
25
A
497 504Right-handed alpha
Helix 26
26
A
513 525Right-handed alpha
Helix 27
27
A
540 556Right-handed alpha
Helix 28
28
B
2 20Right-handed alpha
Helix 29
29
B
34 44Right-handed alpha
Helix 30
30
B
54 70Right-handed alpha
Helix 31
31
B
80 85Right-handed alpha
Helix 32
32
B
86 97Right-handed alpha
Helix 33
33
B
108 112Right-handed 310
Helix 34
34
B
144 158Right-handed alpha
Helix 35
35
B
182 188Right-handed alpha
Helix 36
36
B
189 195Right-handed 310
Helix 37
37
B
213 218Right-handed alpha
Helix 38
38
B
230 245Right-handed alpha
Helix 39
39
B
262 267Right-handed alpha
Helix 40
40
B
269 277Right-handed alpha
Helix 41
41
B
291 301Right-handed alpha
Helix 42
42
B
329 337Right-handed alpha
Helix 43
43
B
348 362Right-handed alpha
Helix 44
44
B
368 376Right-handed alpha
Helix 45
45
B
377 380Right-handed 310
Helix 46
46
B
391 401Right-handed alpha
Helix 47
47
B
420 433Right-handed alpha
Helix 48
48
B
442 448Right-handed alpha
Helix 49
49
B
451 456Right-handed alpha
Helix 50
50
B
473 478Right-handed alpha
Helix 51
51
B
484 489Right-handed alpha
Helix 52
52
B
497 504Right-handed alpha
Helix 53
53
B
513 525Right-handed alpha
Helix 54
54
B
540 554Right-handed alpha
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There are 6 sheets in PDB entry 2JLC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
25 28parallel
Strand 3
A
73 77parallel
Strand 4
A
100 106parallel
Strand 5
A
164 169parallel
Strand 6
A
132 135parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
222 226parallel
Strand 3
A
281 285parallel
Strand 4
A
305 310parallel
Strand 5
A
323 327parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
385 388parallel
Strand 3
A
436 441parallel
Strand 4
A
462 468parallel
Strand 5
A
530 536parallel
Strand 6
A
507 509parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
25 28parallel
Strand 3
B
73 77parallel
Strand 4
B
100 106parallel
Strand 5
B
164 169parallel
Strand 6
B
132 135parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
222 226parallel
Strand 3
B
281 285parallel
Strand 4
B
305 310parallel
Strand 5
B
323 327parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
385 388parallel
Strand 3
B
436 441parallel
Strand 4
B
462 468parallel
Strand 5
B
530 536parallel
Strand 6
B
507 509parallel
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