Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLD entry

There are 3 chains in PDB entry 2JLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35GLN 385
B
 SER 35ILE 384
E
 ALA 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2JLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 104Right-handed alpha
Helix 2
2
A
139 149Right-handed alpha
Helix 3
3
A
154 175Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
224 229Right-handed alpha
Helix 6
6
A
236 253Right-handed alpha
Helix 7
7
A
261 274Right-handed alpha
Helix 8
8
A
277 285Right-handed alpha
Helix 9
9
A
286 289Right-handed 310
Helix 10
10
A
300 305Right-handed alpha
Helix 11
11
A
310 321Right-handed alpha
Helix 12
12
A
324 328Right-handed 310
Helix 13
13
A
330 336Right-handed alpha
Helix 14
14
A
337 345Right-handed 310
Helix 15
15
A
363 368Right-handed alpha
Helix 16
16
A
370 372Right-handed 310
Helix 17
17
A
373 378Right-handed alpha
Helix 18
18
A
379 384Right-handed 310
Helix 19
19
B
95 104Right-handed alpha
Helix 20
20
B
139 149Right-handed alpha
Helix 21
21
B
154 174Right-handed alpha
Helix 22
22
B
183 185Right-handed 310
Helix 23
23
B
224 229Right-handed alpha
Helix 24
24
B
236 253Right-handed alpha
Helix 25
25
B
261 274Right-handed alpha
Helix 26
26
B
277 285Right-handed alpha
Helix 27
27
B
286 289Right-handed 310
Helix 28
28
B
300 305Right-handed alpha
Helix 29
29
B
310 321Right-handed alpha
Helix 30
30
B
324 328Right-handed 310
Helix 31
31
B
330 336Right-handed alpha
Helix 32
32
B
337 345Right-handed 310
Helix 33
33
B
363 368Right-handed alpha
Helix 34
34
B
370 372Right-handed 310
Helix 35
35
B
373 378Right-handed alpha
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There are 6 sheets in PDB entry 2JLD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
E
4 7anti-parallel
Strand 3
A
52 65first strand
Strand 4
A
37 44anti-parallel
Strand 5
A
68 75first strand
Strand 6
A
52 65anti-parallel
Strand 7
A
81 88first strand
Strand 8
A
68 75anti-parallel
Strand 9
A
112 118first strand
Strand 10
A
37 44anti-parallel
Strand 11
A
127 133first strand
Strand 12
A
81 88anti-parallel
Strand 13
E
4 7first strand
Strand 14
A
37 44anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 189anti-parallel
Strand 3
A
196 198anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
52 65anti-parallel
Strand 3
B
52 65parallel
Strand 4
B
37 44anti-parallel
Strand 5
B
68 75first strand
Strand 6
B
52 65anti-parallel
Strand 7
B
81 88first strand
Strand 8
B
68 75anti-parallel
Strand 9
B
112 118first strand
Strand 10
B
37 44anti-parallel
Strand 11
B
127 133first strand
Strand 12
B
81 88anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
187 189anti-parallel
Strand 3
B
196 198anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
205 206anti-parallel
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