Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLM entry

There are 6 chains in PDB entry 2JLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ASP 182
B
 MET 1ASP 182
C
 THR 6ASP 182
D
 MET 1ASP 182
E
 PRO 4ASP 182
F
 MET 1ASP 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 2JLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 35Right-handed alpha
Helix 2
2
A
45 59Right-handed alpha
Helix 3
3
A
85 89Right-handed 310
Helix 4
4
A
106 122Right-handed alpha
Helix 5
5
A
135 145Right-handed alpha
Helix 6
6
B
16 35Right-handed alpha
Helix 7
7
B
45 60Right-handed alpha
Helix 8
8
B
85 89Right-handed 310
Helix 9
9
B
100 103Right-handed 310
Helix 10
10
B
106 122Right-handed alpha
Helix 11
11
B
135 145Right-handed alpha
Helix 12
12
C
16 35Right-handed alpha
Helix 13
13
C
46 59Right-handed alpha
Helix 14
14
C
85 89Right-handed 310
Helix 15
15
C
100 103Right-handed 310
Helix 16
16
C
106 122Right-handed alpha
Helix 17
17
C
135 145Right-handed alpha
Helix 18
18
D
16 35Right-handed alpha
Helix 19
19
D
45 59Right-handed alpha
Helix 20
20
D
85 89Right-handed 310
Helix 21
21
D
100 103Right-handed 310
Helix 22
22
D
106 122Right-handed alpha
Helix 23
23
D
135 145Right-handed alpha
Helix 24
24
E
16 35Right-handed alpha
Helix 25
25
E
47 58Right-handed alpha
Helix 26
26
E
85 89Right-handed 310
Helix 27
27
E
100 103Right-handed 310
Helix 28
28
E
106 122Right-handed alpha
Helix 29
29
E
135 145Right-handed alpha
Helix 30
30
F
16 35Right-handed alpha
Helix 31
31
F
45 60Right-handed alpha
Helix 32
32
F
85 89Right-handed 310
Helix 33
33
F
106 122Right-handed alpha
Helix 34
34
F
135 145Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2JLM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
73 81anti-parallel
Strand 4
A
91 98anti-parallel
Strand 5
A
126 132parallel
Strand 6
A
162 172anti-parallel
Strand 7
A
148 159anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
63 68anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
126 132parallel
Strand 6
B
162 172anti-parallel
Strand 7
B
148 159anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
63 67anti-parallel
Strand 3
C
73 81anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
126 132parallel
Strand 6
C
162 172anti-parallel
Strand 7
C
148 159anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 159first strand
Strand 2
D
162 172anti-parallel
Strand 3
D
126 132anti-parallel
Strand 4
D
91 98parallel
Strand 5
D
73 81anti-parallel
Strand 6
D
63 68anti-parallel
Strand 7
D
7 14anti-parallel
Strand 8
E
6 9parallel
Back to list of sheets
Back to top of page

There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
63 67anti-parallel
Strand 3
E
73 81anti-parallel
Strand 4
E
91 98anti-parallel
Strand 5
E
126 132parallel
Strand 6
E
162 172anti-parallel
Strand 7
E
148 159anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 14first strand
Strand 2
F
63 67anti-parallel
Strand 3
F
73 81anti-parallel
Strand 4
F
91 98anti-parallel
Strand 5
F
126 132parallel
Strand 6
F
162 172anti-parallel
Strand 7
F
148 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il