Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLP entry

There are 4 chains in PDB entry 2JLP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38ARG 205
B
 GLY 39ALA 204
C
 ASP 38ALA 204
D
 ASP 37ARG 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2JLP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 111Right-handed 310
Helix 2
2
A
176 181Right-handed alpha
Helix 3
3
A
197 205Right-handed alpha
Helix 4
4
B
105 111Right-handed 310
Helix 5
5
B
176 181Right-handed alpha
Helix 6
6
B
197 204Right-handed alpha
Helix 7
7
C
105 111Right-handed 310
Helix 8
8
C
176 181Right-handed alpha
Helix 9
9
C
197 203Right-handed alpha
Helix 10
10
D
105 111Right-handed 310
Helix 11
11
D
176 181Right-handed alpha
Helix 12
12
D
197 205Right-handed alpha
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There are 6 sheets in PDB entry 2JLP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, DA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 134first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
41 49anti-parallel
Strand 6
A
61 68anti-parallel
Strand 7
A
75 82anti-parallel
Strand 8
A
138 145anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 134first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
41 49anti-parallel
Strand 6
A
193 194anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 134first strand
Strand 2
B
90 98anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
41 49anti-parallel
Strand 6
B
61 68anti-parallel
Strand 7
B
75 82anti-parallel
Strand 8
B
138 145anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 134first strand
Strand 2
B
90 98anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
41 49anti-parallel
Strand 6
B
193 194anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 49first strand
Strand 2
C
61 68anti-parallel
Strand 3
C
75 82anti-parallel
Strand 4
C
137 145anti-parallel
Strand 5
C
127 134anti-parallel
Strand 6
C
90 98anti-parallel
Strand 7
C
159 163anti-parallel
Strand 8
C
186 191anti-parallel
Strand 9
C
41 49anti-parallel
Strand 10
C
41 49parallel
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There are 11 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 134first strand
Strand 2
D
90 98anti-parallel
Strand 3
D
159 163anti-parallel
Strand 4
D
186 191anti-parallel
Strand 5
D
41 49anti-parallel
Strand 6
D
138 145first strand
Strand 7
D
75 82anti-parallel
Strand 8
D
61 68anti-parallel
Strand 9
D
41 49anti-parallel
Strand 10
D
193 194anti-parallel
Strand 11
D
41 49anti-parallel
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