Analysis of interatomic Contacts of Structural Units in PDB entry:
2JLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JLW entry

There are 4 chains in PDB entry 2JLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 168LYS 618
B
 GLY 168LYS 618
C
 U 1 A 7
D
 U 1 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2JLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
179 184Right-handed 310
Helix 2
2
A
202 215Right-handed alpha
Helix 3
3
A
224 236Right-handed alpha
Helix 4
4
A
262 271Right-handed alpha
Helix 5
5
A
290 306Right-handed alpha
Helix 6
6
A
348 354Right-handed alpha
Helix 7
7
A
364 377Right-handed alpha
Helix 8
8
A
389 400Right-handed alpha
Helix 9
9
A
450 459Right-handed alpha
Helix 10
10
A
486 496Right-handed alpha
Helix 11
11
A
509 513Right-handed 310
Helix 12
12
A
527 539Right-handed alpha
Helix 13
13
A
543 552Right-handed alpha
Helix 14
14
A
560 564Right-handed 310
Helix 15
15
A
567 571Right-handed 310
Helix 16
16
A
603 616Right-handed alpha
Helix 17
17
B
179 184Right-handed 310
Helix 18
18
B
202 215Right-handed alpha
Helix 19
19
B
224 236Right-handed alpha
Helix 20
20
B
262 271Right-handed alpha
Helix 21
21
B
290 306Right-handed alpha
Helix 22
22
B
348 354Right-handed alpha
Helix 23
23
B
364 377Right-handed alpha
Helix 24
24
B
389 400Right-handed alpha
Helix 25
25
B
409 412Right-handed 310
Helix 26
26
B
450 459Right-handed alpha
Helix 27
27
B
486 496Right-handed alpha
Helix 28
28
B
509 513Right-handed 310
Helix 29
29
B
526 539Right-handed alpha
Helix 30
30
B
543 552Right-handed alpha
Helix 31
31
B
560 564Right-handed 310
Helix 32
32
B
567 571Right-handed 310
Helix 33
33
B
598 601Right-handed 310
Helix 34
34
B
603 616Right-handed alpha
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There are 10 sheets in PDB entry 2JLW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
310 314parallel
Strand 3
A
280 284parallel
Strand 4
A
218 222parallel
Strand 5
A
257 261parallel
Strand 6
A
240 242parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
470 474parallel
Strand 3
A
421 424parallel
Strand 4
A
358 361parallel
Strand 5
A
404 407parallel
Strand 6
A
382 385parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 434first strand
Strand 2
A
440 448anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
577 578anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
588 590anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
310 315parallel
Strand 3
B
280 284parallel
Strand 4
B
218 222parallel
Strand 5
B
257 261parallel
Strand 6
B
240 242parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 336first strand
Strand 2
B
470 474parallel
Strand 3
B
421 424parallel
Strand 4
B
358 361parallel
Strand 5
B
404 407parallel
Strand 6
B
382 385parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 434first strand
Strand 2
B
440 448anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 574first strand
Strand 2
B
577 578anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 582first strand
Strand 2
B
588 590anti-parallel
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