Analysis of interatomic Contacts of Structural Units in PDB entry:
2JPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JPD entry

There is 1 chain in PDB entry 2JPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 96PRO 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2JPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 108Right-handed 310
Helix 2
2
A
110 116Right-handed alpha
Helix 3
3
A
143 149Right-handed alpha
Helix 4
4
A
150 164Right-handed alpha
Helix 5
5
A
178 193Right-handed alpha
Helix 6
6
A
201 216Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2JPD.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
101 103parallel
Strand 3
A
130 133anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
166 172parallel
Strand 6
A
195 199parallel
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