Analysis of interatomic Contacts of Structural Units in PDB entry:
2JQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JQF entry

There are 2 chains in PDB entry 2JQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 MET 29LYS 201
S
 MET 229LYS 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 2JQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
R
50 63Right-handed alpha
Helix 2
2
R
68 73Right-handed alpha
Helix 3
3
R
78 91Right-handed alpha
Helix 4
4
R
99 107Right-handed alpha
Helix 5
6
S
250 263Right-handed alpha
Helix 6
7
S
265 267Right-handed 310
Helix 7
8
S
268 273Right-handed alpha
Helix 8
9
S
278 291Right-handed alpha
Helix 9
10
S
299 305Right-handed alpha
Helix 10
11
S
307 311Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2JQF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
30 32first strand
Strand 2
R
38 40anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
115 117first strand
Strand 2
R
124 126parallel
Strand 3
R
177 182anti-parallel
Strand 4
R
137 143anti-parallel
Strand 5
R
149 155anti-parallel
Strand 6
R
158 163anti-parallel
Strand 7
R
166 169anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
230 232first strand
Strand 2
S
238 240anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
315 317first strand
Strand 2
S
324 326parallel
Strand 3
S
377 382anti-parallel
Strand 4
S
337 342anti-parallel
Strand 5
S
350 355anti-parallel
Strand 6
S
358 363anti-parallel
Strand 7
S
366 369anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il