Analysis of interatomic Contacts of Structural Units in PDB entry:
2JQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JQX entry

There is 1 chain in PDB entry 2JQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2JQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
23 29Right-handed alpha
Helix 3
3
A
31 71Right-handed alpha
Helix 4
4
A
77 89Right-handed alpha
Helix 5
5
A
106 112Right-handed alpha
Helix 6
6
A
124 133Right-handed alpha
Helix 7
7
A
138 145Right-handed alpha
Helix 8
8
A
159 178Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
246 251Right-handed alpha
Helix 12
12
A
279 295Right-handed alpha
Helix 13
13
A
362 378Right-handed alpha
Helix 14
14
A
395 413Right-handed alpha
Helix 15
15
A
428 434Right-handed alpha
Helix 16
16
A
434 441Right-handed alpha
Helix 17
17
A
452 463Right-handed alpha
Helix 18
18
A
472 476Right-handed 310
Helix 19
19
A
480 495Right-handed alpha
Helix 20
20
A
514 528Right-handed alpha
Helix 21
21
A
537 551Right-handed alpha
Helix 22
22
A
552 563Right-handed alpha
Helix 23
23
A
564 578Right-handed alpha
Helix 24
24
A
588 611Right-handed alpha
Helix 25
25
A
631 648Right-handed alpha
Helix 26
26
A
652 674Right-handed alpha
Helix 27
27
A
683 686Right-handed 310
Helix 28
28
A
687 703Right-handed alpha
Helix 29
29
A
708 723Right-handed alpha
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There are 5 sheets in PDB entry 2JQX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 13anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
420 424parallel
Strand 3
A
386 389parallel
Strand 4
A
334 338parallel
Strand 5
A
266 269parallel
Strand 6
A
116 119parallel
Strand 7
A
532 535parallel
Strand 8
A
505 506parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
256 261anti-parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
225 233anti-parallel
Strand 5
A
216 222anti-parallel
Strand 6
A
317 321anti-parallel
Strand 7
A
326 329anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
200 202anti-parallel
Strand 3
A
207 208anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
627 628anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il