Analysis of interatomic Contacts of Structural Units in PDB entry:
2JRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JRI entry

There are 3 chains in PDB entry 2JRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 182
B
 MET 183GLY 258
C
 MET 259GLY 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2JRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
31 51Right-handed alpha
Helix 3
3
A
56 61Right-handed alpha
Helix 4
4
A
76 88Right-handed alpha
Helix 5
5
A
96 101Right-handed alpha
Helix 6
6
A
144 159Right-handed alpha
Helix 7
7
A
172 178Right-handed alpha
Helix 8
8
A
179 181Right-handed 310
Helix 9
9
B
204 216Right-handed alpha
Helix 10
10
B
219 223Right-handed 310
Helix 11
11
B
238 242Right-handed 310
Helix 12
12
C
280 292Right-handed alpha
Helix 13
13
C
313 318Right-handed alpha
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There are 3 sheets in PDB entry 2JRI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
161 166anti-parallel
Strand 3
A
111 115anti-parallel
Strand 4
A
120 126anti-parallel
Strand 5
A
129 133anti-parallel
Strand 6
A
141 143anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
248 252parallel
Strand 4
B
224 227anti-parallel
Strand 5
B
230 231anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 302first strand
Strand 2
C
326 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il