Analysis of interatomic Contacts of Structural Units in PDB entry:
2JZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JZN entry

There are 3 chains in PDB entry 2JZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 134
B
 THR 2VAL 134
C
 ASN 209LYS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2JZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
41 54Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
B
12 26Right-handed alpha
Helix 7
7
B
41 54Right-handed alpha
Helix 8
8
B
71 82Right-handed alpha
Helix 9
9
B
94 106Right-handed alpha
Helix 10
10
B
110 125Right-handed alpha
Helix 11
11
C
227 236Right-handed alpha
Helix 12
12
C
245 250Right-handed alpha
Helix 13
13
C
251 261Right-handed alpha
Helix 14
14
C
272 281Right-handed alpha
Helix 15
15
C
282 286Right-handed 310
Helix 16
16
C
296 306Right-handed alpha
Helix 17
17
C
334 347Right-handed alpha
Helix 18
18
C
364 370Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2JZN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
4 8parallel
Strand 3
A
62 66parallel
Strand 4
A
87 91parallel
Strand 5
B
127 128anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
4 8parallel
Strand 5
B
31 34parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 271first strand
Strand 2
C
240 244parallel
Strand 3
C
289 294parallel
Strand 4
C
213 220parallel
Strand 5
C
312 317parallel
Strand 6
C
350 353parallel
Strand 7
C
362 363anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 326first strand
Strand 2
C
332 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il