Analysis of interatomic Contacts of Structural Units in PDB entry:
2JZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JZO entry

There are 3 chains in PDB entry 2JZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 130
B
 THR 2LYS 130
D
 ASN 159LYS 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2JZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
41 54Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
B
12 26Right-handed alpha
Helix 7
7
B
41 54Right-handed alpha
Helix 8
8
B
71 82Right-handed alpha
Helix 9
9
B
94 106Right-handed alpha
Helix 10
10
B
110 125Right-handed alpha
Helix 11
11
D
177 186Right-handed alpha
Helix 12
12
D
195 200Right-handed alpha
Helix 13
13
D
201 211Right-handed alpha
Helix 14
14
D
222 231Right-handed alpha
Helix 15
15
D
232 236Right-handed 310
Helix 16
16
D
246 256Right-handed alpha
Helix 17
17
D
284 297Right-handed alpha
Helix 18
18
D
314 320Right-handed alpha
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There are 4 sheets in PDB entry 2JZO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
4 8parallel
Strand 3
A
62 66parallel
Strand 4
A
87 91parallel
Strand 5
B
127 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
4 8parallel
Strand 5
B
31 34parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 221first strand
Strand 2
D
190 194parallel
Strand 3
D
239 244parallel
Strand 4
D
163 170parallel
Strand 5
D
262 267parallel
Strand 6
D
300 303parallel
Strand 7
D
312 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 276first strand
Strand 2
D
282 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il