Analysis of interatomic Contacts of Structural Units in PDB entry:
2K00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2K00 entry

There are 2 chains in PDB entry 2K00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 309LEU 400
B
 GLY 367TYR 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 2K00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
354 356Right-handed 310
Helix 2
2
A
370 374Right-handed 310
Helix 3
3
A
384 400Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2K00.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
326 332anti-parallel
Strand 4
A
312 317anti-parallel
Strand 5
A
378 381anti-parallel
Strand 6
A
365 369anti-parallel
Strand 7
A
358 361anti-parallel
Strand 8
B
374 376anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il