Analysis of interatomic Contacts of Structural Units in PDB entry:
2K78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2K78 entry

There is 1 chain in PDB entry 2K78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25GLY 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 2K78. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 52Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 2K78.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
113 124anti-parallel
Strand 4
A
129 143anti-parallel
Strand 5
A
31 40anti-parallel
Strand 6
A
57 61anti-parallel
Strand 7
A
66 73anti-parallel
Strand 8
A
99 105anti-parallel
Strand 9
A
89 90anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il