Analysis of interatomic Contacts of Structural Units in PDB entry:
2KID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2KID entry

There are 2 chains in PDB entry 2KID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 59LYS 206
C
 LEU 702ALA 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2KID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 98Right-handed alpha
Helix 2
2
A
132 136Right-handed 310
Helix 3
3
A
165 170Right-handed 310
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There is 1 sheet ( A) in PDB entry 2KID.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
149 161anti-parallel
Strand 5
A
197 204anti-parallel
Strand 6
A
181 184anti-parallel
Strand 7
A
117 119parallel
Strand 8
A
102 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il