Analysis of interatomic Contacts of Structural Units in PDB entry:
2KIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2KIN entry

There are 2 chains in PDB entry 2KIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 239
B
 ALA 252GLU 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2KIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed alpha
Helix 2
2
A
59 66Right-handed alpha
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
92 96Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
177 192Right-handed alpha
Helix 7
7
A
198 204Right-handed alpha
Helix 8
8
B
257 271Right-handed alpha
Helix 9
9
B
279 281Right-handed 310
Helix 10
10
B
283 287Right-handed alpha
Helix 11
11
B
289 293Right-handed alpha
Helix 12
12
B
308 326Right-handed 310
Helix 13
13
B
339 349Right-handed alpha
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There are 6 sheets in PDB entry 2KIN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
B
328 331anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
10 16parallel
Strand 3
B
296 305parallel
Strand 4
A
79 85parallel
Strand 5
A
223 232parallel
Strand 6
A
206 217anti-parallel
Strand 7
A
127 138anti-parallel
Strand 8
A
172 174anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
38 41anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
142 145anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
164 166anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
B
334 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il