Analysis of interatomic Contacts of Structural Units in PDB entry:
2KM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2KM2 entry

There are 2 chains in PDB entry 2KM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 134
B
 ALA 1ASP 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2KM2

There are 2 sheets in PDB entry 2KM2. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
40 48anti-parallel
Strand 4
A
30 37anti-parallel
Strand 5
A
117 124anti-parallel
Strand 6
A
5 11anti-parallel
Strand 7
B
5 11anti-parallel
Strand 8
B
117 124anti-parallel
Strand 9
B
30 37anti-parallel
Strand 10
B
40 48anti-parallel
Strand 11
B
57 61anti-parallel
Strand 12
B
72 74anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
96 99anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
B
126 133anti-parallel
Strand 7
B
16 23anti-parallel
Strand 8
B
84 91anti-parallel
Strand 9
B
96 99anti-parallel
Strand 10
B
105 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il