Analysis of interatomic Contacts of Structural Units in PDB entry:
2LDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LDM entry

There are 2 chains in PDB entry 2LDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 84LEU 369
A
 SER 371GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 2LDM

There is 1 sheet ( A) in PDB entry 2LDM.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
102 111anti-parallel
Strand 4
A
92 96anti-parallel
Strand 5
A
133 134anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il