Analysis of interatomic Contacts of Structural Units in PDB entry:
2LIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LIP entry

There is 1 chain in PDB entry 2LIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2LIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 40Right-handed alpha
Helix 2
2
A
61 76Right-handed alpha
Helix 3
3
A
87 99Right-handed 310
Helix 4
4
A
101 103Right-handed 310
Helix 5
5
A
118 129Right-handed alpha
Helix 6
6
A
134 150Right-handed alpha
Helix 7
7
A
160 166Right-handed alpha
Helix 8
8
A
169 178Right-handed alpha
Helix 9
9
A
237 241Right-handed 310
Helix 10
10
A
243 258Right-handed alpha
Helix 11
11
A
269 272Right-handed alpha
Helix 12
12
A
304 318Right-handed alpha
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There are 3 sheets in PDB entry 2LIP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
10 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 209parallel
Strand 6
A
276 279parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
226 228anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 209first strand
Strand 2
A
196 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il