Analysis of interatomic Contacts of Structural Units in PDB entry:
2LJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LJR entry

There are 2 chains in PDB entry 2LJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 244
B
 MET 1PRO 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2LJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
43 46Right-handed alpha
Helix 4
4
A
67 77Right-handed alpha
Helix 5
5
A
89 105Right-handed alpha
Helix 6
6
A
112 117Right-handed alpha
Helix 7
7
A
119 123Right-handed alpha
Helix 8
8
A
129 149Right-handed alpha
Helix 9
9
A
164 178Right-handed alpha
Helix 10
10
A
188 201Right-handed alpha
Helix 11
11
A
203 209Right-handed alpha
Helix 12
12
A
211 221Right-handed 310
Helix 13
13
A
230 242Right-handed alpha
Helix 14
14
B
12 23Right-handed alpha
Helix 15
15
B
39 41Right-handed 310
Helix 16
16
B
43 46Right-handed alpha
Helix 17
17
B
67 77Right-handed alpha
Helix 18
18
B
83 85Right-handed 310
Helix 19
19
B
89 105Right-handed alpha
Helix 20
20
B
112 117Right-handed alpha
Helix 21
21
B
119 123Right-handed alpha
Helix 22
22
B
129 149Right-handed alpha
Helix 23
23
B
164 178Right-handed alpha
Helix 24
24
B
188 201Right-handed alpha
Helix 25
25
B
203 209Right-handed alpha
Helix 26
26
B
211 221Right-handed 310
Helix 27
27
B
230 242Right-handed alpha
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There are 2 sheets in PDB entry 2LJR. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
4 7parallel
Strand 3
A
56 59anti-parallel
Strand 4
A
62 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
4 7parallel
Strand 3
B
56 59anti-parallel
Strand 4
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il