Analysis of interatomic Contacts of Structural Units in PDB entry:
2LMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LMP entry

There are 18 chains in PDB entry 2LMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9VAL 40
B
 GLY 9VAL 40
C
 GLY 9VAL 40
D
 GLY 9VAL 40
E
 GLY 9VAL 40
F
 GLY 9VAL 40
G
 GLY 9VAL 40
H
 GLY 9VAL 40
I
 GLY 9VAL 40
J
 GLY 9VAL 40
K
 GLY 9VAL 40
L
 GLY 9VAL 40
M
 GLY 9VAL 40
N
 GLY 9VAL 40
O
 GLY 9VAL 40
P
 GLY 9VAL 40
Q
 GLY 9VAL 40
R
 GLY 9VAL 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2LMP

There are 7 sheets in PDB entry 2LMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
B
16 21parallel
Strand 3
C
16 21parallel
Strand 4
D
16 21parallel
Strand 5
E
16 22parallel
Strand 6
F
16 22parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
B
30 37parallel
Strand 3
C
30 37parallel
Strand 4
D
31 36parallel
Strand 5
E
31 36parallel
Strand 6
F
31 36parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
17 21first strand
Strand 2
H
17 21parallel
Strand 3
I
17 21parallel
Strand 4
J
17 21parallel
Strand 5
K
17 21parallel
Strand 6
L
17 21parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
31 35first strand
Strand 2
H
31 35parallel
Strand 3
I
31 36parallel
Strand 4
J
29 36parallel
Strand 5
K
29 36parallel
Strand 6
L
31 35parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
16 21first strand
Strand 2
N
16 21parallel
Strand 3
O
16 21parallel
Strand 4
P
16 21parallel
Strand 5
Q
16 21parallel
Strand 6
R
16 21parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
31 35first strand
Strand 2
N
30 35parallel
Strand 3
O
30 36parallel
Strand 4
P
31 36parallel
Strand 5
Q
31 36parallel
Strand 6
R
31 36parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
11 13first strand
Strand 2
P
11 13parallel
Strand 3
Q
12 13parallel
Strand 4
R
12 13parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il