Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2LNW entry
There are 3 chains in PDB entry 2LNW
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
SER 659 | GLU 771 |
B
|
GLU 1404 | VAL 1407 |
B
|
GLU 1409 | GLY 1412 |
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There are 3
helices in PDB entry 2LNW. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
1 | A
| 679 |
690 | Right-handed alpha |
| Helix 2 |
2 | A
| 739 |
750 | Right-handed alpha |
| Helix 3 |
3 | A
| 751 |
755 | Right-handed 310 |
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There is
1 sheet ( A) in PDB entry 2LNW.
There are 4
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
A
| 695 |
699 | first strand |
| Strand 2 |
A
| 705 |
712 | anti-parallel |
| Strand 3 |
A
| 717 |
725 | anti-parallel |
| Strand 4 |
A
| 728 |
730 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il