Analysis of interatomic Contacts of Structural Units in PDB entry:
2LYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LYD entry

There are 2 chains in PDB entry 2LYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -6LYS 127
B
 GLY 1318LEU 1355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2LYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 18Right-handed alpha
Helix 2
2
A
98 100Right-handed 310
Helix 3
3
A
109 126Right-handed alpha
Helix 4
4
B
1342 1354Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2LYD.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
42 56anti-parallel
Strand 4
A
23 37anti-parallel
Strand 5
A
101 107anti-parallel
Strand 6
A
92 97anti-parallel
Strand 7
A
85 89anti-parallel
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