Analysis of interatomic Contacts of Structural Units in PDB entry:
2M5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2M5C entry

There is 1 chain in PDB entry 2M5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2M5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 75Right-handed alpha
Helix 2
2
A
94 102Right-handed alpha
Helix 3
3
A
110 119Right-handed alpha
Helix 4
4
A
168 170Right-handed 310
Helix 5
5
A
185 197Right-handed alpha
Helix 6
6
A
216 227Right-handed alpha
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There are 4 sheets in PDB entry 2M5C. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
40 41anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
45 46anti-parallel
Strand 5
A
52 54anti-parallel
Strand 6
A
79 83parallel
Strand 7
A
104 106parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 141anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
205 208parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il