Analysis of interatomic Contacts of Structural Units in PDB entry:
2M5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2M5S entry

There is 1 chain in PDB entry 2M5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 222VAL 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 2M5S. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HA
A
322 327Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2M5S. Click on sheet of interest to get list of strands forming it: BS1, BS2,

There are 7 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 263first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
292 302anti-parallel
Strand 4
A
269 276anti-parallel
Strand 5
A
335 342anti-parallel
Strand 6
A
228 233anti-parallel
Strand 7
A
255 263anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
329 332parallel
Strand 3
A
278 280anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il