Analysis of interatomic Contacts of Structural Units in PDB entry:
2M8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2M8C entry

There is 1 chain in PDB entry 2M8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLY 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2M8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
54 64Right-handed alpha
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
108 113Right-handed alpha
Helix 5
5
A
123 133Right-handed alpha
Helix 6
6
A
145 156Right-handed alpha
Helix 7
7
A
164 172Right-handed alpha
Helix 8
8
A
175 181Right-handed alpha
Helix 9
9
A
190 195Right-handed alpha
Helix 10
10
A
206 223Right-handed alpha
Helix 11
11
A
224 234Right-handed alpha
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There are 5 sheets in PDB entry 2M8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
8 12parallel
Strand 3
A
69 70parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
29 31anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
197 198anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
200 202anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
116 120parallel
Strand 3
A
160 161parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il