Analysis of interatomic Contacts of Structural Units in PDB entry:
2M9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2M9P entry

There are 2 chains in PDB entry 2M9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 240
B
 LYS 253ARG 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2M9P

There are 3 sheets in PDB entry 2M9P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
119 121anti-parallel
Strand 3
A
6 12parallel
Strand 4
A
82 90anti-parallel
Strand 5
A
93 103anti-parallel
Strand 6
A
106 110anti-parallel
Strand 7
A
137 140anti-parallel
Strand 8
A
130 132anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
167 173parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
198 202anti-parallel
Strand 5
A
209 217anti-parallel
Strand 6
A
221 227anti-parallel
Strand 7
A
183 188anti-parallel
Strand 8
A
175 178anti-parallel
Strand 9
A
29 30parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
38 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il