Analysis of interatomic Contacts of Structural Units in PDB entry:
2MEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MEV entry

There are 4 chains in PDB entry 2MEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLY 1THR 268
2
 GLU 8GLN 256
3
 SER 1GLN 231
4
 SER 13ALA 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2MEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
Z1
1
32 37Right-handed alpha
Helix 2
A1
1
111 117Right-handed alpha
Helix 3
A2
2
95 102Right-handed alpha
Helix 4
B2
2
171 177Right-handed alpha
Helix 5
Z3
3
44 48Right-handed alpha
Helix 6
A3
3
92 101Right-handed alpha
Helix 7
B3
3
138 144Right-handed alpha
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There are 11 sheets in PDB entry 2MEV. Click on sheet of interest to get list of strands forming it: S11, S21, S31, S12, S22, S32, S13, S23, S33, S43, S53,

There are 4 strands in S11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
41 46first strand
Strand 2
1
235 250anti-parallel
Strand 3
1
122 134anti-parallel
Strand 4
1
184 188anti-parallel
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There are 4 strands in S21 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
41 46first strand
Strand 2
1
235 250anti-parallel
Strand 3
1
122 134anti-parallel
Strand 4
1
197 198anti-parallel
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There are 4 strands in S31 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
68 71first strand
Strand 2
1
224 228anti-parallel
Strand 3
1
140 147anti-parallel
Strand 4
1
171 174anti-parallel
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There are 4 strands in S12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
63 70first strand
Strand 2
2
232 247anti-parallel
Strand 3
2
105 116anti-parallel
Strand 4
2
190 196anti-parallel
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There are 4 strands in S22 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
63 70first strand
Strand 2
2
232 247anti-parallel
Strand 3
2
105 116anti-parallel
Strand 4
2
204 204anti-parallel
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There are 4 strands in S32 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 87first strand
Strand 2
2
211 223anti-parallel
Strand 3
2
123 131anti-parallel
Strand 4
2
180 184anti-parallel
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There are 4 strands in S13 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
52 54first strand
Strand 2
3
205 220anti-parallel
Strand 3
3
103 114anti-parallel
Strand 4
3
158 162anti-parallel
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There are 4 strands in S23 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
52 54first strand
Strand 2
3
205 220anti-parallel
Strand 3
3
103 114anti-parallel
Strand 4
3
171 172anti-parallel
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There are 4 strands in S33 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
64 67first strand
Strand 2
3
205 220anti-parallel
Strand 3
3
103 114anti-parallel
Strand 4
3
158 162anti-parallel
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There are 4 strands in S43 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
64 67first strand
Strand 2
3
205 220anti-parallel
Strand 3
3
103 114anti-parallel
Strand 4
3
171 173anti-parallel
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There are 4 strands in S53 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
78 82first strand
Strand 2
3
185 196anti-parallel
Strand 3
3
121 129anti-parallel
Strand 4
3
146 152anti-parallel
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