Analysis of interatomic Contacts of Structural Units in PDB entry:
2MLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MLY entry

There are 2 chains in PDB entry 2MLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 432
B
 MET 1ASP 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2MLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 39Right-handed alpha
Helix 2
2
A
50 58Right-handed alpha
Helix 3
3
A
62 82Right-handed alpha
Helix 4
4
A
119 122Right-handed 310
Helix 5
5
A
133 148Right-handed alpha
Helix 6
6
A
201 205Right-handed 310
Helix 7
7
A
249 254Right-handed alpha
Helix 8
8
A
255 257Right-handed 310
Helix 9
9
A
262 298Right-handed alpha
Helix 10
10
A
303 322Right-handed alpha
Helix 11
11
A
327 332Right-handed 310
Helix 12
12
A
333 336Right-handed 310
Helix 13
13
A
337 358Right-handed alpha
Helix 14
14
A
363 376Right-handed alpha
Helix 15
15
A
381 390Right-handed alpha
Helix 16
16
A
391 413Right-handed alpha
Helix 17
17
A
423 427Right-handed 310
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There are 4 sheets in PDB entry 2MLY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
103 111anti-parallel
Strand 4
A
86 94anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 130first strand
Strand 2
A
416 422parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
175 188anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
230 235anti-parallel
Strand 5
A
211 216anti-parallel
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