Analysis of interatomic Contacts of Structural Units in PDB entry:
2MPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2MPZ entry

There are 27 chains in PDB entry 2MPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 15	VAL 40
B	GLN 15	VAL 40
C	GLN 15	VAL 40
D	GLN 15	VAL 40
E	GLN 15	VAL 40
F	GLN 15	VAL 40
G	GLN 15	VAL 40
H	GLN 15	VAL 40
I	GLN 15	VAL 40
J	GLN 15	VAL 40
K	GLN 15	VAL 40
L	GLN 15	VAL 40
M	GLN 15	VAL 40
N	GLN 15	VAL 40
O	GLN 15	VAL 40
P	GLN 15	VAL 40
Q	GLN 15	VAL 40
R	GLN 15	VAL 40
S	GLN 15	VAL 40
T	GLN 15	VAL 40
U	GLN 15	VAL 40
V	GLN 15	VAL 40
W	GLN 15	VAL 40
X	GLN 15	VAL 40
Y	GLN 15	VAL 40
Z	GLN 15	VAL 40
a	GLN 15	VAL 40

There are no helices in PDB entry 2MPZ

There are 6 sheets in PDB entry 2MPZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	24	first strand
Strand 2	Y	17	24	parallel
Strand 3	V	17	24	parallel
Strand 4	S	17	24	parallel
Strand 5	P	17	24	parallel
Strand 6	M	17	24	parallel
Strand 7	J	17	24	parallel
Strand 8	G	17	24	parallel
Strand 9	D	17	24	parallel

Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	36	first strand
Strand 2	Y	31	36	parallel
Strand 3	V	31	36	parallel
Strand 4	S	31	36	parallel
Strand 5	P	31	36	parallel
Strand 6	M	31	36	parallel
Strand 7	J	31	36	parallel
Strand 8	G	31	36	parallel
Strand 9	D	31	36	parallel

Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	24	first strand
Strand 2	E	17	24	parallel
Strand 3	H	17	24	parallel
Strand 4	K	17	24	parallel
Strand 5	N	17	24	parallel
Strand 6	Q	17	24	parallel
Strand 7	T	17	24	parallel
Strand 8	W	17	24	parallel
Strand 9	Z	17	24	parallel

Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	E	31	36	parallel
Strand 3	H	31	36	parallel
Strand 4	K	31	36	parallel
Strand 5	N	31	36	parallel
Strand 6	Q	31	36	parallel
Strand 7	T	31	36	parallel
Strand 8	W	31	36	parallel
Strand 9	Z	31	36	parallel

Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	24	first strand
Strand 2	F	17	24	parallel
Strand 3	I	17	24	parallel
Strand 4	L	17	24	parallel
Strand 5	O	17	24	parallel
Strand 6	R	17	24	parallel
Strand 7	U	17	24	parallel
Strand 8	X	17	24	parallel
Strand 9	a	17	24	parallel

Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	36	first strand
Strand 2	F	31	36	parallel
Strand 3	I	31	36	parallel
Strand 4	L	31	36	parallel
Strand 5	O	31	36	parallel
Strand 6	R	31	36	parallel
Strand 7	U	31	36	parallel
Strand 8	X	31	36	parallel
Strand 9	a	31	36	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2MPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2MPZ